PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G04060.1 | ||||||||
Common Name | anac046, NAC046, T11I18.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 37780.6 Da PI: 6.7949 | ||||||||
Description | NAC domain containing protein 46 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174 | 4.3e-54 | 20 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdee++++yLk+kv + ++++ +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ kg AT3G04060.1 20 LPPGFRFHPTDEEIITHYLKEKVFNIRFTA-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKGC 116 79*************************999.78***************8888899***************************************9*** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfy+grapkgekt+Wvmheyrl AT3G04060.1 117 LVGMKKTLVFYTGRAPKGEKTNWVMHEYRL 146 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-62 | 17 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.018 | 20 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-29 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN 60 EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM 120 KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT 180 TKQLSRIDSL DNIDHLLDFS SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD 240 NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA 300 TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-51 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-51 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-51 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-51 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-51 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-51 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-51 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-51 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-51 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-51 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27906 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18396757 | 0.0 | ||||
Genevisible | 258813_at | 0.0 | ||||
Expression Atlas | AT3G04060 | - | ||||
AtGenExpress | AT3G04060 | - | ||||
ATTED-II | AT3G04060 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00332 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G04060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G04060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084852 | 0.0 | AY084852.1 Arabidopsis thaliana clone 119460 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187056.1 | 0.0 | NAC domain containing protein 46 | ||||
Swissprot | Q9SQQ6 | 0.0 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | A0A178VF11 | 0.0 | A0A178VF11_ARATH; NAC046 | ||||
STRING | AT3G04060.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 | Representative plant | OGRP17 | 15 | 800 |
Link Out ? help Back to Top | |
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Phytozome | AT3G04060.1 |
Entrez Gene | 819561 |
iHOP | AT3G04060 |
wikigenes | AT3G04060 |