PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.G01992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24130.8 Da PI: 6.0241 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 55 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr + grWv+e+r+p g r+r++lg+f tae+Aa+a++ a+++l+g Pahal.G01992.1 55 PVYKGVRSRN-PGRWVCEVREP--HG-RQRIWLGTFETAEMAARAHDVAALALRG 105 68****9666.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 55 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.483 | 56 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-20 | 56 | 114 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-30 | 56 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-27 | 56 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-8 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.65E-19 | 57 | 115 | No hit | No description |
PRINTS | PR00367 | 5.8E-8 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MDWTYSGSGC GYGYYSSSPP AGGGGGGEES SYMTVSSAPP KRRAGRTKFK ETRHPVYKGV 60 RSRNPGRWVC EVREPHGRQR IWLGTFETAE MAARAHDVAA LALRGRAACL NFADSPRRLR 120 VPPQGAGHDE IRRAAVEAAE LFRPQHNAGA PEAAAAAAIA VPGAQASGGL GGDFAYYPAD 180 DGLEFEMQGY LDMAQGMLID PPAANAVQSA WIDDEYDCEV SLWSY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-13 | 54 | 112 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00453 | DAP | Transfer from AT4G25480 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU956044 | 0.0 | EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824660.1 | 1e-164 | dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | A2XWL6 | 1e-104 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 1e-104 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A2S3I9J0 | 1e-163 | A0A2S3I9J0_9POAL; Uncharacterized protein | ||||
STRING | Si011005m | 1e-120 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-38 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.G01992.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|