PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F00488.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 366aa MW: 37653 Da PI: 6.3754

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F00488.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.4	2.2e-37	65	169	6	110
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............ 88 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ + ++ss+ Pahal.F00488.1 65 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQSSSssspsslamvad 158 6999********************************************************77777333.33333333333333111111223333 PP TCP 89 .kaaksaakskksqksaasalnl 110 + +s+a+ + + Pahal.F00488.1 159 gE------------ESSAKRRRK 169 21............111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.381	67	121	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.5E-31	67	162	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEAQAQHRAE EGEAAARQHA VGAGGVTAAA GVAMGAIPMH GFMVPKPEPV EYFGGMAVVR 60 SKPPPRNRDR HTKVEGRGRR IRMPAACAAR IFQLTRELGH KSDGETIRWL LQQSEPAIIA 120 ATGTGTVPAI ATTVDGVLRI PTQSSSSSSP SSLAMVADGE ESSAKRRRKL QPTRAAAGAS 180 PLATAAPAAY YPVIADPLLQ GTGGAAISVP SGLAPITTGP GAPQGLVPVF AVPAAGSPGG 240 GANRMIPQAT AVWMVPQPGA AAGGAAAQPT QFWAIQSAPQ LINLGGAQTA VFPTAVNVAD 300 FQHQQQQAST MSHSSNSAEQ HQLHLQHPGS GPHEQRRGGR SDVDHPEEDE DDDDEEPVSD 360 SSPEE*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEAQAQHRAE EGEAAARQHA VGAGGVTAAA GVAMGAIPMH GFMVPKPEPV EYFGGMAVVR  60
SKPPPRNRDR HTKVEGRGRR IRMPAACAAR IFQLTRELGH KSDGETIRWL LQQSEPAIIA  120
ATGTGTVPAI ATTVDGVLRI PTQSSSSSSP SSLAMVADGE ESSAKRRRKL QPTRAAAGAS  180
PLATAAPAAY YPVIADPLLQ GTGGAAISVP SGLAPITTGP GAPQGLVPVF AVPAAGSPGG  240
GANRMIPQAT AVWMVPQPGA AAGGAAAQPT QFWAIQSAPQ LINLGGAQTA VFPTAVNVAD  300
FQHQQQQAST MSHSSNSAEQ HQLHLQHPGS GPHEQRRGGR SDVDHPEEDE DDDDEEPVSD  360
SSPEE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU945866	0.0	EU945866.1 Zea mays clone 288123 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819925.1	0.0	transcription factor PCF2-like
Swissprot	A2YXQ1	1e-154	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-154	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A2S3I4I0	0.0	A0A2S3I4I0_9POAL; Uncharacterized protein
STRING	Pavir.Fa00111.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-42	TCP family protein

Link Out ? help Back to Top
Phytozome	Pahal.F00488.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]