PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04498.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 521aa    MW: 56373.2 Da    PI: 6.5471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04498.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32138195260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  Pahal.B04498.3 138 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 195
                     8****************************************.***************85 PP
2WRKY107.75.6e-34311369159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Pahal.B04498.3 311 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 369
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-28128196IPR003657WRKY domain
PROSITE profilePS5081123.801132196IPR003657WRKY domain
SuperFamilySSF1182907.19E-25136196IPR003657WRKY domain
SMARTSM007743.6E-35137195IPR003657WRKY domain
PfamPF031061.7E-24138194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-38296371IPR003657WRKY domain
SuperFamilySSF1182904.71E-30303371IPR003657WRKY domain
PROSITE profilePS5081138.297306371IPR003657WRKY domain
SMARTSM007746.5E-40311370IPR003657WRKY domain
PfamPF031061.1E-26312369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAAIINKSTH LDILPSPRDK STGSGHEDGD SRDFEFKPHL SCQPAGPAVN NPNHHDTSMQ  60
NHTSSSSNLM TENKSLCSRE SIHQTANISS VLNQPVAIVG PSDNMPAEVS TSERNQMNSS  120
ENAAQETQTE NVAEKSAEDG YNWRKYGQKH VKGSENPRSY YKCTHPNCEV KKLLERSLDG  180
QITEVVYKGR HNHPKPQPNR RLAAGAVPSN QGEERYDGAT PVEDKPSNIY PNLCNQVHSA  240
GMIDPVPGPA SDDDGDGGGG RPYPGDDANE DDDLDSKRRK MESAGIDAAL MGKPNREPRV  300
VVQTVSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTHT GCPVRKHVER ASHDPKSVIT  360
TYEGKHNHEV PASRNASHEM SAAPMKPAGH PINSSMPGLG GMMRACDARA FTNQYSQAAE  420
SDTISLDLGV GISPNHSDAT NQMQPSVPEP MQYQMQHMAP VYGSMGFPGM PVPTVPGNAA  480
SSAYGSREEK GNEGFTFKAA PLDRSANLCY SSAGNLVMGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36138372878Probable WRKY transcription factor 4
2lex_A2e-36138372878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548880.0BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801894.10.0WRKY transcription factor SUSIBA2-like isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A2S3H4150.0A0A2S3H415_9POAL; Uncharacterized protein
STRINGSi029245m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-102WRKY family protein