PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B02793.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 458aa MW: 45932.5 Da PI: 6.6804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B02793.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	250	295	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pahal.B02793.1 250 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 295 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.30E-13	243	299	No hit	No description
SuperFamily	SSF47459	5.5E-17	243	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	247	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	250	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MQPTTREMQA MAAAGQISLD DLRAAGGVHD DFLDQMLGGL PPSAWPELAS AAGAKAPEGG 60 AEAEGMHQQH HQQQQQQFGG GLYDESALLA SRLRQHQISG GGGAESAAAA KQMVLQQLAD 120 LRHGHHMLLQ GMGRSTGGGG GDGGVLLPLS LGSGGSGGDV QALLKAAANS AGGEASGVFG 180 GAFAGSLQQQ QQHFQPHPQS QQQTAPLPGQ GFGGGGGGAS QPQAGASGGG AAAPPRQRVR 240 ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV 300 LSMSRLGGAA AVAPLVADMS SEGQGGAPPA AAGSDGLAVT EQQVAKLMEE DMGTAMQYLQ 360 GKGLCLMPVS LASAISSATC HMRPPVGGLG VAAAAHHMAA MRLPPGMNGG ADAAAVPASP 420 SMSVLTAQSA MANGAGGADG EGSHSQQPKD AASVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MQPTTREMQA MAAAGQISLD DLRAAGGVHD DFLDQMLGGL PPSAWPELAS AAGAKAPEGG  60
AEAEGMHQQH HQQQQQQFGG GLYDESALLA SRLRQHQISG GGGAESAAAA KQMVLQQLAD  120
LRHGHHMLLQ GMGRSTGGGG GDGGVLLPLS LGSGGSGGDV QALLKAAANS AGGEASGVFG  180
GAFAGSLQQQ QQHFQPHPQS QQQTAPLPGQ GFGGGGGGAS QPQAGASGGG AAAPPRQRVR  240
ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV  300
LSMSRLGGAA AVAPLVADMS SEGQGGAPPA AAGSDGLAVT EQQVAKLMEE DMGTAMQYLQ  360
GKGLCLMPVS LASAISSATC HMRPPVGGLG VAAAAHHMAA MRLPPGMNGG ADAAAVPASP  420
SMSVLTAQSA MANGAGGADG EGSHSQQPKD AASVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	259	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062076	0.0	BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBank	KJ727938	0.0	KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799597.1	0.0	glycine, alanine and asparagine-rich protein-like
Swissprot	Q9ZUG9	2e-79	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2S3GZY8	0.0	A0A2S3GZY8_9POAL; Uncharacterized protein
STRING	Pavir.Ba01914.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-45	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Pahal.B02793.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]