PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG018438.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 453aa MW: 47833.1 Da PI: 6.3168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG018438.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.3e-12	250	295	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq CCG018438.1 250 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 295 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.24E-13	243	299	No hit	No description
SuperFamily	SSF47459	4.58E-17	243	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	247	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	250	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MQPCSREMQG INSLLNPSSQ IPLQDLQNEQ NPSQIQNSHF DPNSSSNDDF LEQMLSTIPP 60 CSWPDLKSPW DHTMPINNND SSNSIAKPRD LSDETAPSNT DNSNLGFHNN IDESVILASK 120 LRHHQISGGG AAAAKMMLQQ QLLMAVARGG LPQNDAIDGS SFKGGDGSMQ GLFNGFGAGS 180 MNGTGQASNQ SMQHFNHPRA WAMQTQNFGA QGAATTAVMN QPQASGSNGG APAQPRQRVR 240 ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV 300 LSMSRLGSAA AVAPLVVDIS SEAGGDCIQA SADGGSLSHT SNGNQTARTN DSSLTVTEHQ 360 VAKLMEEDMG TAMQYLQGKG LCLMPISLAT AISTATCHSR GPAINNNHHA LLQSNGEGPA 420 SPSMSVLTVQ SATMGNAGGD GGAVKDAASV SKP

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MQPCSREMQG INSLLNPSSQ IPLQDLQNEQ NPSQIQNSHF DPNSSSNDDF LEQMLSTIPP  60
CSWPDLKSPW DHTMPINNND SSNSIAKPRD LSDETAPSNT DNSNLGFHNN IDESVILASK  120
LRHHQISGGG AAAAKMMLQQ QLLMAVARGG LPQNDAIDGS SFKGGDGSMQ GLFNGFGAGS  180
MNGTGQASNQ SMQHFNHPRA WAMQTQNFGA QGAATTAVMN QPQASGSNGG APAQPRQRVR  240
ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV  300
LSMSRLGSAA AVAPLVVDIS SEAGGDCIQA SADGGSLSHT SNGNQTARTN DSSLTVTEHQ  360
VAKLMEEDMG TAMQYLQGKG LCLMPISLAT AISTATCHSR GPAINNNHHA LLQSNGEGPA  420
SPSMSVLTVQ SATMGNAGGD GGAVKDAASV SKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	259	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147939	0.0	EF147939.1 Populus trichocarpa clone WS0126_B22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018013.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	3e-86	BH066_ARATH; Transcription factor bHLH66
TrEMBL	B9IMF5	0.0	B9IMF5_POPTR; Uncharacterized protein
STRING	POPTR_0018s11800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-64	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]