PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010775.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 363aa    MW: 40980.3 Da    PI: 4.9564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010775.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-29128189159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+ed +++e+tY+g+H+++
  CCG010775.1 128 LDDGYSWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRSDEDHSIFEVTYRGRHTCN 189
                  59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-29120190IPR003657WRKY domain
PROSITE profilePS5081123.158123191IPR003657WRKY domain
SuperFamilySSF1182903.92E-26127190IPR003657WRKY domain
SMARTSM007743.1E-42128190IPR003657WRKY domain
PfamPF031067.2E-27129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MELSMEWEHK TLISELTQGK ELAKQLSNHL NPSSSLEAHQ FLVDKILSSY EKALSLLNLG  60
ALVADQPKPT IGTVEPLHSF ANSSPRSEVS DQDCKEECNK DVYKKRKIQR RWTEQVKVCS  120
GTGLEGPLDD GYSWRKYGQK DILGANFPRG YYRCTHRHSQ GCLATKQVQR SDEDHSIFEV  180
TYRGRHTCNQ ASPSPVASPS PKNDCSKQSK YHRKQQRQEN PKPTEEMFVN FGSDFVQVKN  240
EDLGSKDEIF PSFSFPFTSF GNENEENNIF TESMMENNFL GSFSPTFISP ATSESNYFSM  300
SPCHMNSFGI GYQNVQTPES ELTTEILSAP TSVTNSPIGD FDIAIDNVDF DTTFPFDNPD  360
FFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-191281861474Disease resistance protein RRS1
5w3x_D2e-191281861474Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774260.0GQ377426.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037871.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLA0A2I4KKA20.0A0A2I4KKA2_POPTR; WRKY family protein
STRINGPOPTR_0014s09190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-50WRKY family protein