PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_28429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TCP | ||||||||
Protein Properties | Length: 303aa MW: 32070.6 Da PI: 6.7577 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.7 | 4.8e-39 | 58 | 146 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a++ ss s++s + PEQU_28429 58 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaaAAAAAPSSISHPSTA 146 789******************************************************************77754333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-31 | 63 | 163 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.07 | 64 | 118 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDSHGSSELQ HEHPKFLQNQ DKAETQRELQ MVISTSEREL PLVSSATEEK DDQKKQLAPK 60 RSSNKDRHTK VDGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ AEPSIIAATG 120 SGTIPASALA AAAAAAPSSI SHPSTAAAGL HPMLNDPPPS TSAAASRPNW ATGLWPPAVP 180 VFGSHGFLPT NNLGGSSEGP AGGGFMQRIG LPGLELPGAN LGQMSFASLL SGHGQQIPGL 240 ELGLSQDGHI GVLNPHSLGQ FYLQMGQGRG GGNDEQQLQN QHHQHQQQSQ GSLNKDDSDG 300 STQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020592159.1 | 0.0 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 3e-68 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1D6ZNG1 | 0.0 | A0A1D6ZNG1_PHAEQ; TCP transcription factor | ||||
STRING | XP_008790742.1 | 9e-99 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 8e-65 | TCP family protein |