PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_15634

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

TCP

Protein Properties

Length: 301aa MW: 31308.6 Da PI: 9.6768

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_15634	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.5	5.8e-35	62	141	6	86
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 +r++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d+ ti WLlq a+pai+++tgt++ +a ++ +++ + ++ PEQU_15634 62 RRTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGDTIRWLLQHAEPAIIAATGTGTVPAIATnVNGTLKIPTQ--A 141 69**********************************************************8888844421222222222..1 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.3E-29	63	140	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.964	64	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MDFQTPNKED APTWIADPGE TTAGGQAAAF SSSSSIRNRL IMPKPESLDT IAPLPIIPHP 60 LRRTKDRHTK VEGRGRRIRI PATCAARIFQ LTRELGHKSD GDTIRWLLQH AEPAIIAATG 120 TGTVPAIATN VNGTLKIPTQ ASNPAPSVTS AADVTKRRRK LQPTRAVAGG GVIGYFQGAD 180 LVIPSGGAIS ISAGLAPVAA SRVVPMWTTV SGAAAISPAA GWEMFPSSAA TSSQGHILTF 240 PIGLSATGVN FAAARPVLAA AGAAISEAVG GKEELELMKE SVDADEFEEQ RGKVKPLSET 300 D

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00635	PBM	Transfer from PK14653.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ439606	0.0	HQ439606.1 Phalaenopsis hybrid cultivar candidate developmental transcription factor TCP4 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572411.1	0.0	transcription factor PCF2-like
Swissprot	A2YXQ1	6e-53	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	6e-53	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A1D6ZNF0	0.0	A0A1D6ZNF0_PHAEQ; TCP transcription factor
STRING	XP_008776516.1	1e-81	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-47	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]