PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14653.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TCP
Protein Properties Length: 379aa    MW: 40880 Da    PI: 9.0674
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14653.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1134.1e-35842183100
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssaseceaessss 80 
                +k+ +++++h kv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt                      +              
  PK14653.1  84 AKRASTKDRHRKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTgtvpaiamsvngtlkiptdtpdP-------------- 169
                7999***********************************************************54444444444444444332220.............. PP

        TCP  81 sasnsssg....................................kaaksaakskks 100
                       +                                     + ++++++ ++
  PK14653.1 170 -------EpddptlkrkrkrpvnseyvdvnegfsvsvsaglaplTQTQQQHQQPQP 218
                .......0222222222333334444555556655555555554222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-2988193IPR005333Transcription factor, TCP
PROSITE profilePS5136926.27489143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAMIQNNEAK EEKGRRVVEM KINGGGEAER NDAVATEETN QRLSLNEAAP TSLSVEPKEE  60
PEERSSADAL QLVPLTVKVP GTVAKRASTK DRHRKVEGRG RRIRMPAACA ARIFQLTREL  120
GHKSDGETIR WLLEHAEPAI IAATGTGTVP AIAMSVNGTL KIPTDTPDPE PDDPTLKRKR  180
KRPVNSEYVD VNEGFSVSVS AGLAPLTQTQ QQHQQPQPQH QQQAVPQGFV PMWTIPSNAV  240
VPGAFFVVPP MASVAGHNNT PSTSQPHIFT FQNSATPFIN ISATRPISSF VSSMANFVTA  300
PVQFQATTTT ASSNLTSINS VQKPPPMATP SVITSDSAAT ASAATATTTS TATTQMLRDF  360
SLEIYDKKEL QFMTRSSKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175182LKRKRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBM25215497Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904289.11e-129transcription factor TCP9
TrEMBLA0A2P5EI001e-146A0A2P5EI00_TREOI; TCP transcription factor
STRINGevm.model.supercontig_18.1761e-129(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-67TCP family protein