PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TCP | ||||||||
Protein Properties | Length: 253aa MW: 26846.3 Da PI: 5.769 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.4 | 1.8e-36 | 44 | 124 | 6 | 92 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqqa++ai ++tgt++++a ++ +++ +++ +a+ PEQU_09751 44 KRTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQAEHAIFAATGTGTIPAIAT-NVNGT-----LKIPTEAP 124 79**********************************************************99999444.22222.....22222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-30 | 45 | 122 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.001 | 46 | 100 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGAQEKEMED DNHTSIAGNR QIIPKPEPSD PMGTPLPIIQ IPPKRTKDRH TKVEGRGRRI 60 RMPAACAARI FQLTRELGHK SDGETIRWLL QQAEHAIFAA TGTGTIPAIA TNVNGTLKIP 120 TEAPAAAISE DETGKKRRKL QPMRGSDRAF ISSGGAMSIP AGLAPITPMW AIAGGGAAMI 180 APGGVWMVPS SQMWGFPAGS VVVSDGQGGS PTKGEGKQEL QLMREAAEEE QEGGGEEEEG 240 SREPASEKVP DNQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575223.1 | 0.0 | transcription factor PCF2-like | ||||
Swissprot | A2YXQ1 | 6e-56 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 6e-56 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A1D6ZNE8 | 0.0 | A0A1D6ZNE8_PHAEQ; TCP transcription factor | ||||
STRING | XP_008776516.1 | 3e-65 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 6e-37 | TCP family protein |
Publications ? help Back to Top | |||
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