PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr034262.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 470aa MW: 48469.4 Da PI: 6.5629

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr034262.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.6e-12	264	309	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pbr034262.2 264 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 309 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.50E-13	257	313	No hit	No description
SuperFamily	SSF47459	5.76E-17	257	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	259	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	261	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	264	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MQPCSREMQE MNSLLNASAS ASQLSLQDHH HLQQQQSHSH SSQMHPQTPN PPASHFDSAT 60 HDDFLEQMLS TLGPSWASAA DDAPPPPSSN PDNVVFSYDD SATLSSKFRS QQISAGSGAN 120 KSASASAAAA AAMMLPHQLM MSRSGAADSG FSPMGLSLRN NGDFDRSNSD VGDVSSFKSP 180 NTGGGDGASS VQSLFNGFGG SLHGAANSQS PNFHHPQGGQ LLAQNYGGAG AAMNQAPAGG 240 AAGGAPAQPK PRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE 300 IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ADMSSEGGGD CIQASANGGT RGRSSNGNQT 360 ASSSNDNSMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHSRNPLLQ 420 NSNNNPVIPS NGGDGPSSPS MSVLTVQSAT MGNGGVEGSV KDATSVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MQPCSREMQE MNSLLNASAS ASQLSLQDHH HLQQQQSHSH SSQMHPQTPN PPASHFDSAT  60
HDDFLEQMLS TLGPSWASAA DDAPPPPSSN PDNVVFSYDD SATLSSKFRS QQISAGSGAN  120
KSASASAAAA AAMMLPHQLM MSRSGAADSG FSPMGLSLRN NGDFDRSNSD VGDVSSFKSP  180
NTGGGDGASS VQSLFNGFGG SLHGAANSQS PNFHHPQGGQ LLAQNYGGAG AAMNQAPAGG  240
AAGGAPAQPK PRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE  300
IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ADMSSEGGGD CIQASANGGT RGRSSNGNQT  360
ASSSNDNSMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHSRNPLLQ  420
NSNNNPVIPS NGGDGPSSPS MSVLTVQSAT MGNGGVEGSV KDATSVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	273	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr034262.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009358465.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	6e-95	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A498HVG8	0.0	A0A498HVG8_MALDO; Uncharacterized protein
STRING	XP_009358465.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-66	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]