PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01066g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22126.9 Da PI: 9.7975 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.8e-21 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ + r++lg+f+taeeAaka++aa++ ++g Peaxi162Scf01066g00013.1 27 HYRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAAKAYDAAARDFRG 76 6********.**********864...6**********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.078 | 27 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-19 | 27 | 84 | No hit | No description |
Pfam | PF00847 | 5.6E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-40 | 27 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 27 | 85 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-33 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAMKEKMKKG SGNINRNTNG VVKDQVHYRG VRKRPWGRYA AEIRDPTKKS RVWLGTFDTA 60 EEAAKAYDAA ARDFRGPKAK TNFPLPSENQ CPSNSTESSS GETGVHAPPQ LDLTRHLGAE 120 DGHVMNGFPV LHQQPAVAVL PNGQPILLFD GSAFLRTGVV NRFEPVAVQF NGANDRVVHS 180 DSGSSSVGRK GLDLDLNLAP PLEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 27 | 85 | 5 | 64 | ATERF1 |
3gcc_A | 5e-22 | 27 | 85 | 5 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595390.1 | 4e-77 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Refseq | XP_009609806.1 | 4e-77 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Swissprot | Q9LW49 | 4e-77 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | E7FKW0 | 3e-75 | E7FKW0_TOBAC; Ethylene response factor 3b | ||||
STRING | XP_009595390.1 | 1e-76 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009609806.1 | 1e-76 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-31 | erf domain protein 9 |