PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00420g00064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | TCP | ||||||||
Protein Properties | Length: 254aa MW: 27387.5 Da PI: 9.6317 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.1 | 1.4e-33 | 30 | 130 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 +k+++ +++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa p+i+++tg+++ +as+ +++ss+s+++ s Peaxi162Scf00420g00064.1 30 PKRSSRKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAGPSIIAATGNGTVPASALaTTGSSVSQQGISV 114 68999***************************************************************88866666666655222 PP TCP 87 sg.............k 89 s+ + Peaxi162Scf00420g00064.1 115 SAglqqkmgefggtiS 130 2234333334444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-29 | 34 | 236 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.699 | 35 | 89 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGENKPAEIK DFQIGITEKS DEAKNQQLGP KRSSRKDRHI KVEGRGRRIR MPALCAARIF 60 QLTRELGHKS DGETIQWLLQ QAGPSIIAAT GNGTVPASAL ATTGSSVSQQ GISVSAGLQQ 120 KMGEFGGTIS SRTSWSNVSG NFGRPNLGTT GIWPPVGTES SSYLQKISFP GFDLPATNMN 180 SMSFTSMLGA NNSQQVPGLE LGLSQDGHIG VMNHQSLSQM YQQMGHTRMH HSQQQQQQTQ 240 HQQPSPEDDS QGSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561744.1 | 1e-136 | PREDICTED: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 2e-67 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1U8G195 | 1e-134 | A0A1U8G195_CAPAN; transcription factor TCP20 | ||||
TrEMBL | A0A2G3AD00 | 1e-134 | A0A2G3AD00_CAPAN; Transcription factor TCP20 | ||||
TrEMBL | A0A2G3DA78 | 1e-134 | A0A2G3DA78_CAPCH; Transcription factor TCP20 | ||||
STRING | XP_009613491.1 | 1e-135 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 7e-65 | TCP family protein |