PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_120049g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 27784.3 Da PI: 8.5083 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.2e-17 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l + v++ G+++W++I++ ++ gR++k+c++rw + MA_120049g0010 18 KGPWSPEEDAALQHFVQKCGPRNWSLISKAIP-GRSGKSCRLRWCNQ 63 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 72 | 114 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd +++a++q+G++ W+tIar++ gRt++ +k++w++ MA_120049g0010 72 PFTPEEDATIIRAHAQHGNK-WATIARMLS-GRTDNAIKNHWNST 114 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.144 | 13 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-32 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-15 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-17 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.15E-15 | 20 | 62 | No hit | No description |
SMART | SM00717 | 1.3E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.278 | 70 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-15 | 72 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.44E-13 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MASMKGKSSG HDEPDRIKGP WSPEEDAALQ HFVQKCGPRN WSLISKAIPG RSGKSCRLRW 60 CNQLSPQVEH RPFTPEEDAT IIRAHAQHGN KWATIARMLS GRTDNAIKNH WNSTLRRRCQ 120 GGGALVIDDE ITSGADGFRK RSLSEDADAS RKLKKLSLGT TATTTTTEPC SSSASDRSDS 180 SLALGSPPVY RPVPRAAPLS LTNEANLNPS HHEASCSSAD PPTSLCLSLP GTDAPAAPTL 240 PQDLPLPSVP CRCLGLLLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-39 | 14 | 119 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-39 | 14 | 119 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00476 | DAP | Transfer from AT4G37260 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101188 | 0.0 | BT101188.1 Picea glauca clone GQ0071_N15 mRNA sequence. | |||
GenBank | EF601069 | 0.0 | EF601069.1 Picea glauca R2R3-MYB transcription factor MYB6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002285015.1 | 2e-80 | PREDICTED: transcription factor MYB44 | ||||
Swissprot | O23160 | 4e-68 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A5JYF0 | 1e-154 | A5JYF0_PICGL; R2R3-MYB transcription factor MYB6 | ||||
STRING | VIT_18s0001g09850.t01 | 8e-80 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-65 | myb domain protein 77 |
Publications ? help Back to Top | |||
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