PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_14593A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | TCP | ||||||||
Protein Properties | Length: 346aa MW: 35669.7 Da PI: 5.99 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.2 | 2.5e-37 | 56 | 159 | 6 | 98 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg. 88 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ + ++ss+ Oropetium_20150105_14593A 56 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQSSSs 138 6999********************************************************77777433.333333333333331 PP TCP 89 ...........kaaksaaksk 98 ++++++ +k Oropetium_20150105_14593A 139 sspsslavvegDESSAKRRRK 159 111222233332222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.381 | 58 | 112 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.0E-30 | 58 | 150 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEAQAQDRAA AEEGARQHAA AGGVAMGAIP MHGFIVPKPE PVELFGGMAM VRKPPPRNRD 60 RHTKVEGRGR RIRMPAACAA RIFQLTRELG HKSDGETIRW LLQQSEPAII AATGTGTVPA 120 IATTVDGVLR IPTQSSSSSS PSSLAVVEGD ESSAKRRRKL QPTRAAAGAS PLATAPAAYY 180 PIIADPLLQG SGGAAITTVP SGLAPMTASG APQGLVPVFA VPATGNPAAG GGNRMIPQAT 240 AVWMVPQPGA AAGAGNQFWA IQSAPQLINL AGAPGAVFPT SLNVADYHQQ QQQQISTMST 300 HNSNSEHQHP GSGSHDQQRG GGVDHPEEED DDDDEEPASD SSPEE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_14593A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008664491.3 | 1e-164 | transcription factor PCF2 | ||||
Swissprot | A2YXQ1 | 1e-157 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 1e-157 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A317Y4S8 | 1e-165 | A0A317Y4S8_MAIZE; Transcription factor PCF2 | ||||
STRING | OMERI08G17040.1 | 1e-156 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 4e-41 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_14593A |
Publications ? help Back to Top | |||
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