PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08055A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 593aa    MW: 63328.9 Da    PI: 4.3618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08055AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.42.7e-9330955878314
                       GRAS  78 laalkl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeel 158
                                ++a+ l   f+e +P+lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l
  Oropetium_20150105_08055A 309 AFADLLhahFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDDTDAL 392
                                444433445*************************************************************************** PP

                       GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                +++g +La+fA++++v+f+++ lva +l+dle+ +L+ +        E++aVn+v+++hrll+++++le+    vL +v+ ++P
  Oropetium_20150105_08055A 393 QQVGYKLAQFAHTIHVDFKYRGLVAATLADLEPFMLQPDGeekddePEVIAVNSVFEMHRLLAQPGALEK----VLGTVRAVRP 472
                                ************************************65544455679***********************....********** PP

                       GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleak........lpres..eerikvErellgreivnvvacegaerrerhe 310
                                k+v+vveqea+hn++sFl+rf+e+l+yys++fdsle +         +  +   +++++++++lgr+i+nvvacegaer+erhe
  Oropetium_20150105_08055A 473 KIVTVVEQEANHNAGSFLDRFTESLHYYSTMFDSLEGGgsgqseasPG--AaaGTDQVMSEVYLGRQICNVVACEGAERTERHE 554
                                ***********************************8885666554323..14699***************************** PP

                       GRAS 311 tlek 314
                                tl++
  Oropetium_20150105_08055A 555 TLGQ 558
                                9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.1E-3538112IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.8E-3238118No hitNo description
PROSITE profilePS5098548.24216592IPR005202Transcription factor GRAS
PfamPF035149.4E-91309558IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MKREYQDAGG SASGSSDLGS AKDKMMLAPA GEQEEEMDEL LAALGYKVRS SDMADVAQKL  60
EQLEMAMEMG GVAGAPEDDG FVSHLATDTV HYNPSDLSSW VESMLSELNA PPPPLPPAPA  120
AAPAPTXXXX XXXXXXXXXX XXXXXXXXXP PAVDSSSSTY ALKPIPSPVA APADPSTDST  180
RDPKRMRTGG GSTSSSSSSS SSLGGGGPRS SVGDAAPPAS AAANEPAVPV VMVDTQEAGI  240
RLVHALLACA EAVQQENFSA AEALXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPA  300
ADSSLLDAAF ADLLHAHFYE SCPYLKFAHF TANQAILEAF AGCRRVHVVD FGIKQGMQWP  360
ALLQALALRP GGPPSFRLTG VGPPQPDDTD ALQQVGYKLA QFAHTIHVDF KYRGLVAATL  420
ADLEPFMLQP DGEEKDDEPE VIAVNSVFEM HRLLAQPGAL EKVLGTVRAV RPKIVTVVEQ  480
EANHNAGSFL DRFTESLHYY STMFDSLEGG GSGQSEASPG AAAGTDQVMS EVYLGRQICN  540
VVACEGAERT ERHETLGQLT VLAGVTRWTW DSNWTGLFVL PPIPLQLIFS YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-4130758568328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08055A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7939560.0JN793956.1 Eragrostis tef bio-material 494365 reduced height-1 (rht1-1) gene, complete cds.
GenBankJN7939570.0JN793957.1 Eragrostis tef bio-material 524442 reduced height-1 (rht1-1) gene, complete cds.
GenBankJN7939580.0JN793958.1 Eragrostis tef bio-material 494289 reduced height-1 (rht1-1) gene, complete cds.
GenBankJN7939590.0JN793959.1 Eragrostis tef bio-material 524446 reduced height-1 (rht1-1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354393.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLH9A2B90.0H9A2B9_ERATE; Reduced height-2
STRINGGRMZM2G144744_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-128RGA-like 1
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]