PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035930-PA
Common NameOsI_38904
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 250aa    MW: 25237.3 Da    PI: 7.8031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035930-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007191113123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk F +   L  H  +H
  BGIOSGA035930-PA  91 HRCSVCGKAFASYQALGGHKASH 113
                       79**********99998888877 PP
2zf-C2H210.90.0014158177120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ Cgk F++   L  H 
  BGIOSGA035930-PA 158 HECNVCGKAFPTGQALGGHK 177
                       78*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.02391113IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.56E-1091113No hitNo description
PROSITE profilePS5015711.36591118IPR007087Zinc finger, C2H2
PfamPF139125.7E-1391115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576674.56E-10153180No hitNo description
PfamPF139122.5E-13157182IPR007087Zinc finger, C2H2
SMARTSM003550.063158180IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-5158180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388158180IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAVEAVLEAS RSSSEEEAEV IVTHGGGGGG GGGGGQVEGW GKRKRSRRRR PQLPPSEEEY  60
LALCLLMLAR GRRDGDDVAA SASAAAAAVE HRCSVCGKAF ASYQALGGHK ASHRKPPPPP  120
PPAMVDDDEV VVETKPAAIA TPSSSASGVS GGGGGRAHEC NVCGKAFPTG QALGGHKRCH  180
YDGTIGSAAG AGASKPAAKT TVAVAASRGF DLNLPALPDV AAAADQRCAA EDDEVLSPLA  240
FKKPRLMIPA
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}.
UniprotTISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}.
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2198470.0AY219847.1 Oryza sativa Japonica Group zinc finger protein ZFP252 mRNA, complete cds.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620192.11e-113zinc finger protein 1
SwissprotQ424301e-45ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0FDI91e-177A0A0E0FDI9_9ORYZ; Uncharacterized protein
TrEMBLA2ZM461e-177A2ZM46_ORYSI; Uncharacterized protein
TrEMBLQ84L701e-177Q84L70_ORYSJ; Zinc finger protein ZFP252
STRINGOMERI12G11860.11e-177(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-26C2H2 family protein