PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G49930.1 | ||||||||
Common Name | F3A4.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 23306.6 Da PI: 7.3422 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.8e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksF++ L H +H AT3G49930.1 94 YKCSVCGKSFPSYQALGGHKTSH 116 9***********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.15E-9 | 92 | 116 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 92 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.3E-14 | 94 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.783 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0022 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.15E-9 | 144 | 171 | No hit | No description |
Pfam | PF13912 | 2.8E-12 | 148 | 173 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.871 | 149 | 171 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 149 | 171 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 151 | 171 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL 60 ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG KSFPSYQALG GHKTSHRKPV 120 SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN 180 GDNSHKFDLN LPADQVSDET IGKSQLSGEE TKSVL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.35551 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30693252 | 0.0 | ||||
Genevisible | 252236_at | 0.0 | ||||
Expression Atlas | AT3G49930 | - | ||||
AtGenExpress | AT3G49930 | - | ||||
ATTED-II | AT3G49930 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00399 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G49930.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G49930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL132978 | 0.0 | AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4. | |||
GenBank | BT029377 | 0.0 | BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_190562.1 | 1e-159 | C2H2 and C2HC zinc fingers superfamily protein | ||||
Swissprot | Q9SSW1 | 1e-67 | AZF1_ARATH; Zinc finger protein AZF1 | ||||
TrEMBL | Q9SN24 | 1e-157 | Q9SN24_ARATH; At3g49930 | ||||
STRING | AT3G49930.1 | 1e-158 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3121 | 22 | 64 | Representative plant | OGRP131 | 15 | 149 |
Link Out ? help Back to Top | |
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Phytozome | AT3G49930.1 |
Entrez Gene | 824155 |
iHOP | AT3G49930 |
wikigenes | AT3G49930 |
Publications ? help Back to Top | |||
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