PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA029292-PA | ||||||||
Common Name | OsI_32343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 537aa MW: 55155.4 Da PI: 9.5117 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H BGIOSGA029292-PA 78 FVCEVCNKGFQREQNLQLHRRGH 100 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00043 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k++ +s+ k H +t+ BGIOSGA029292-PA 154 WRCDKCSKRYAVQSDWKAHSKTC 176 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.02E-7 | 77 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-6 | 77 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 3.4E-5 | 78 | 100 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.094 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.0E-4 | 142 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.02E-7 | 149 | 174 | No hit | No description |
SMART | SM00355 | 150 | 154 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MAAASSAPFF GLGDTQMPPP QNPTNPALHH HPNPSPAPVA AAAPAPKKKR NQPGNPSKYP 60 DAEVIALSPR TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKEARRRVYL 120 CPEPSCVHHD PSRALGDLTG IKKHYCRKHG EKKWRCDKCS KRYAVQSDWK AHSKTCGTRE 180 YRCDCGTLFS RRDSFITHRA FCDALAQENA RMPPIGAGVY GGAGNMTLGL TGMAAPQLPA 240 GFPDQAGQPS ASAGDVLRLG GGSNGASQFD HLMASSSGSS MFRSQGSSSS SFYLANGAAH 300 HAPAQDFGPE DGQSQAGQGS LLHGKPAAFH DLMQLPVQHQ QSGNGNLLNL GFFSGSNGGV 360 DQFNGGAGNG GQGSIVTSSG LAGNHGGGGG VFPSLYNSSE PAGTLPQMSA TALLQKAAQM 420 GATTSSYNAG GAGGASSLLR GASSHGISAG EGPANERASY QNLIMGSMAS GGGGAGFAGS 480 FSGASGFGGA VDDGKLSTRD FLGVGVVQGI SGSAAMGPPR HGAAGLHVGS LDPANMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 150 | 212 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 150 | 212 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.61536 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116632379 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101181 | 0.0 | AK101181.1 Oryza sativa Japonica Group cDNA clone:J033029F02, full insert sequence. | |||
GenBank | AK101950 | 0.0 | AK101950.1 Oryza sativa Japonica Group cDNA clone:J033075E02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612461.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_015612462.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_015612463.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_015612465.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_015612466.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-121 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | B8BED3 | 0.0 | B8BED3_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM09G19710.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ONIVA09G20340.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-110 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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