PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G14580.2 | ||||||||
Common Name | IDD6, T5E21.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 467aa MW: 50636.4 Da PI: 9.4827 | ||||||||
Description | C2H2-like zinc finger protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 84 | 104 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H AT1G14580.2 84 CEVCNKGFQREQNLQLHRRGH 104 *******************88 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00034 | 158 | 180 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ AT1G14580.2 158 WKCDKCSKRYAVQSDWKAHSKTC 180 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.7E-6 | 81 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.87E-7 | 81 | 104 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 82 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 123 | 153 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 146 | 179 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.87E-7 | 153 | 178 | No hit | No description |
SMART | SM00355 | 140 | 158 | 178 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009047 | anatomy | stem | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MSSSYNTIAL SSTPTFLLSS AAAGPGPNNF NRQEAAMTMV QQQPTSSVAP PPKKRRNQPG 60 NPNPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH RRGHNLPWKL KQKSNKEVRR 120 KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC 180 GTKEYRCDCG TIFSRRDSYI THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA 240 SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ 300 GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS 360 ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ QGRSPSLFDL HFANNLSMGG 420 SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-34 | 154 | 220 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 4e-34 | 154 | 220 | 3 | 69 | Zinc finger protein JACKDAW |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.24519 | 0.0 | flower| leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 260776_at | 0.0 | ||||
Expression Atlas | AT1G14580 | - | ||||
AtGenExpress | AT1G14580 | - | ||||
ATTED-II | AT1G14580 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00142 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G14580.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G14580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY091041 | 0.0 | AY091041.1 Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds. | |||
GenBank | AY133766 | 0.0 | AY133766.1 Arabidopsis thaliana clone U18944 putative zinc finger protein (At1g14580) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001184994.1 | 0.0 | C2H2-like zinc finger protein | ||||
Refseq | NP_001320583.1 | 0.0 | C2H2-like zinc finger protein | ||||
Refseq | NP_172910.2 | 0.0 | C2H2-like zinc finger protein | ||||
Swissprot | Q8RWX7 | 0.0 | IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic | ||||
TrEMBL | A0A178WBS5 | 0.0 | A0A178WBS5_ARATH; Uncharacterized protein | ||||
TrEMBL | A0A1P8ANA3 | 0.0 | A0A1P8ANA3_ARATH; C2H2-like zinc finger protein | ||||
STRING | AT1G14580.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT1G14580.2 |
Entrez Gene | 838020 |
iHOP | AT1G14580 |
wikigenes | AT1G14580 |