PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G20510.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 282aa    MW: 30554.7 Da    PI: 4.4715
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G20510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.2e-184395355
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55
                     k+++++ eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++
  ORUFI08G20510.1 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARQ 95
                     456899*********************************************96 PP
2Homeobox20.76.9e-07941084256
                      HHHHHHHHHHHHHHH CS
         Homeobox  42 rqVkvWFqNrRakek 56 
                      rqV vWFqNrRa++k
  ORUFI08G20510.1  94 RQVAVWFQNRRARWK 108
                      8*************9 PP
3HD-ZIP_I/II86.53.4e-284294153
      HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53
                     ekkrrls eqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR
  ORUFI08G20510.1 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRAR 94
                     69**************************************************9 PP
4HD-ZIP_I/II721.2e-23931464093
      HD-ZIP_I/II  40 prqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +rqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e+ke
  ORUFI08G20510.1  93 ARQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKE 146
                      59***********************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.39E-173094IPR009057Homeodomain-like
PROSITE profilePS5007116.2123898IPR001356Homeobox domain
SMARTSM003892.1E-1441114IPR001356Homeobox domain
CDDcd000861.06E-154395No hitNo description
PfamPF000462.1E-154395IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-174994IPR009057Homeodomain-like
PRINTSPR000319.8E-66978IPR000047Helix-turn-helix motif
PRINTSPR000319.8E-67894IPR000047Helix-turn-helix motif
SuperFamilySSF466891.84E-694121IPR009057Homeodomain-like
PROSITE profilePS500719.42694110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-795117IPR009057Homeodomain-like
PfamPF021837.9E-18110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRSPAALLPV VADGGGGVGV EEEMDVDEDM AMCGGRGGGG GEKKRRLSVE QVRALERSFE  60
TENKLEPERK ARLARDLGLQ PRQVAVWFQN RRARQVAVWF QNRRARWKTK QLERDYAALR  120
QSYDALRADH DALRRDKDAL LAEIKELKGK LGDEDAAASF SSVKEEEEDP AASDADPPAT  180
GAPQGSSESD SSAVLNDAEI PPHKPAPAAA ADAAASEETE AVVTGAALLH HAEVFFHGQL  240
LKVDDDEAAF LGDDGAACGG FFADEHLPSL PWWAEPTEQW TT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13340GGRGGGGG
26773ERKARLA
3102110RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682440.0AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence.
GenBankAK1068180.0AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence.
GenBankCT8294460.0CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650851.11e-162homeobox-leucine zipper protein HOX20
SwissprotA2YWC01e-163HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-163HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A0E0QKD20.0A0A0E0QKD2_ORYRU; Uncharacterized protein
STRINGORUFI08G20510.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.21e-42homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]