PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.6.1363.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 280aa    MW: 30331.3 Da    PI: 10.5768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.6.1363.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-152973147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W++eE+ l+v+  k++G   W++I +++g ++t+ q++s+ qk+
     gw1.6.1363.1 29 REKWSEEEHALFVESLKKYGRA-WRKIEAHIG-TKTAVQIRSHAQKF 73
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-142379IPR009057Homeodomain-like
PROSITE profilePS5129421.5132478IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-92576IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-152776IPR006447Myb domain, plants
SMARTSM007179.3E-132876IPR001005SANT/Myb domain
PfamPF002491.1E-122972IPR001005SANT/Myb domain
CDDcd001674.97E-103174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
TETTVEAAAA AQDAAPVKVR KPYTITKKRE KWSEEEHALF VESLKKYGRA WRKIEAHIGT  60
KTAVQIRSHA QKFFSKLQKE QHARAANGSG DGNAQSDGKK RAASASAAGG NKKTKTGLDK  120
RELEIEIPPA RPKRKPAHPY PKKATSQQPS RGSGDRNSGG TGKSFQTEQK MVELGDNAEA  180
IANASSSAAV AAVLSVASDK MQNNLQQDIR ASYFGISPPP MAGMFPQAGL FPMHNMMNPY  240
LGMANPAAGA QNPPQMSNPQ QFVNYINFLT NMWQHNAAVM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001418464.11e-115predicted protein, partial
TrEMBLA4RYW31e-114A4RYW3_OSTLU; Uncharacterized protein (Fragment)
STRINGABO967571e-115(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.18e-31MYB_related family protein