PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.0400010070
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 269aa    MW: 29578.4 Da    PI: 9.8696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.0400010070genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.67e-143074147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r +WT+ E+ ++++a +++  + Wk+I +++g ++t  q++s+ qk+
  EuGene.0400010070 30 RVSWTPKEHARFLKALELYNRD-WKRIEEYVG-TKTVIQIRSHAQKH 74
                       679****************977.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-162478IPR009057Homeodomain-like
PROSITE profilePS5129417.3752579IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-72678IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-162877IPR006447Myb domain, plants
SMARTSM007174.4E-102977IPR001005SANT/Myb domain
PfamPF002491.2E-113074IPR001005SANT/Myb domain
CDDcd001678.96E-93275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSEKQSASKG TSPTVPAKKP RKPYTKTKPR VSWTPKEHAR FLKALELYNR DWKRIEEYVG  60
TKTVIQIRSH AQKHFLKVLK NGTGEHLPPP RRKATNKAPA LKVEKTEVAK GNAADAQAMQ  120
LVNGTSDGSL TFQAQGRSQE SPPDEHGMST NMSAPDFKAV YSFLSDLFQV KQTASSSTQA  180
QEVLEGMKPV DRETTVLLMK NIRNNLCSRQ MWQEQADLVA EGCVTFLDPQ DALSMHTKSP  240
PSHSVQKDVS GEGGSGEGSN EALEMNNL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417610.16e-75predicted protein, partial
TrEMBLA4RWN51e-73A4RWN5_OSTLU; Uncharacterized protein (Fragment)
STRINGABO959032e-74(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.11e-35MYB_related family protein