PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G20520.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 442aa MW: 45418.3 Da PI: 6.4301

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G20520.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119	5.6e-37	75	174	6	94
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg... 88 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ ++sssss g OPUNC08G20520.1 75 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATtvdgvlriPTQSSSSS------Gpas 162 6999********************************************************666663333222222211112222......1222 PP TCP 89 .......kaaksa 94 + ++++ OPUNC08G20520.1 163 savvdgeE-SSAK 174 22233221.1111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-30	77	168	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.381	77	131	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MEAEAQAQDK AEEEEGTRQQ HAQAGPVGAA GVGGGGGGGP AAMAMSAIPM NSWLVPKPEP 60 VEFFGGMAVV RKPPPRNRDR HTKVEGRGRR IRMPAACAAR IFQLTRELGH KSDGETIRWL 120 LQQSEPAIIA ATGTGTVPAI ATTVDGVLRI PTQSSSSSGP ASSAVVDGEE SSAKRRRKLQ 180 PTRAVAGASP LATAAPAAYY PVIADPLLQG SGGAAISVQS GLAPITATGA PQGLVPVFAV 240 PATGSPAVAG GNRMIPQATA VWMVPQPAGA AGAGNQPTQF WAIQSAPQLV NFAGAQFPTA 300 INVADFQQQQ QQPVSTTIVQ NSNSGEHPVH MHFSGADSHE QQRRGRKEGN SGVVDHPEED 360 EDDDDDEPVS DSSPEERDGE RPARACGGTR GALTHTAGAG RWDQAGGGSG GAPGGPKWWC 420 GGSKGGLADR AVARVTAWPS RD

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MEAEAQAQDK AEEEEGTRQQ HAQAGPVGAA GVGGGGGGGP AAMAMSAIPM NSWLVPKPEP  60
VEFFGGMAVV RKPPPRNRDR HTKVEGRGRR IRMPAACAAR IFQLTRELGH KSDGETIRWL  120
LQQSEPAIIA ATGTGTVPAI ATTVDGVLRI PTQSSSSSGP ASSAVVDGEE SSAKRRRKLQ  180
PTRAVAGASP LATAAPAAYY PVIADPLLQG SGGAAISVQS GLAPITATGA PQGLVPVFAV  240
PATGSPAVAG GNRMIPQATA VWMVPQPAGA AGAGNQPTQF WAIQSAPQLV NFAGAQFPTA  300
INVADFQQQQ QQPVSTTIVQ NSNSGEHPVH MHFSGADSHE QQRRGRKEGN SGVVDHPEED  360
EDDDDDEPVS DSSPEERDGE RPARACGGTR GALTHTAGAG RWDQAGGGSG GAPGGPKWWC  420
GGSKGGLADR AVARVTAWPS RD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648330.1	0.0	transcription factor PCF2
Swissprot	A2YXQ1	0.0	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	0.0	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A0E0LXL0	0.0	A0A0E0LXL0_ORYPU; Uncharacterized protein
STRING	OPUNC08G20520.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-44	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]