PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G15440.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 356aa    MW: 39049.1 Da    PI: 5.2711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G15440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.32.1e-55201471129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee+v++yL++k+ +++++   vi evd++k+ePw+Lp ++k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+++
  OPUNC03G15440.1  20 LPPGFRFHPTDEEIVSHYLTPKALDHRFSS-GVIGEVDLNKCEPWHLPGMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFR 112
                      79*************************999.99***************888899**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +g lvg+kktLvfy grap+gekt Wvmhe+rle
  OPUNC03G15440.1 113 GRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 147
                      ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6411170IPR003441NAC domain
PROSITE profilePS5100558.50420170IPR003441NAC domain
PfamPF023656.5E-2921146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSEVSVMAEV EETAAAPLDL PPGFRFHPTD EEIVSHYLTP KALDHRFSSG VIGEVDLNKC  60
EPWHLPGMAK MGEKEWYFFC HKDRKYPTGT RTNRATESGY WKATGKDKEI FRGRGILVGM  120
KKTLVFYLGR APRGEKTGWV MHEFRLEGKL PSQLPRSAKD QWAVCKVFNK ELALAAKNGP  180
MAVTGETADD AGIERVGSFG FLSEFIDPAE LPPLMDPSFV ADIDGVDDAK VSASTSGQAA  240
VATGYHAAPG VTYQHVKMEE PLPLPYLHQQ PQRMLYSDQY FSLPAVHPGD LTPSAIRKYC  300
KAEQVSGQTS ALSASRDTGL STDPNAAGCA EISSAPTSQP FPEFDEAILG LDDFWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5351712166NO APICAL MERISTEM PROTEIN
1ut4_B2e-5351712166NO APICAL MERISTEM PROTEIN
1ut7_A2e-5351712166NO APICAL MERISTEM PROTEIN
1ut7_B2e-5351712166NO APICAL MERISTEM PROTEIN
3swm_A2e-5371717169NAC domain-containing protein 19
3swm_B2e-5371717169NAC domain-containing protein 19
3swm_C2e-5371717169NAC domain-containing protein 19
3swm_D2e-5371717169NAC domain-containing protein 19
3swp_A2e-5371717169NAC domain-containing protein 19
3swp_B2e-5371717169NAC domain-containing protein 19
3swp_C2e-5371717169NAC domain-containing protein 19
3swp_D2e-5371717169NAC domain-containing protein 19
4dul_A2e-5351712166NAC domain-containing protein 19
4dul_B2e-5351712166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0659890.0AK065989.1 Oryza sativa Japonica Group cDNA clone:J013046E14, full insert sequence.
GenBankJN1854450.0JN185445.1 Oryza sativa Japonica Group NAC transcription factor 39 (NAC39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633121.10.0NAC domain-containing protein 92
TrEMBLA0A0E0KD780.0A0A0E0KD78_ORYPU; Uncharacterized protein
STRINGOPUNC03G15440.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-91Arabidopsis NAC domain containing protein 87