PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G25480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 23890.4 Da PI: 5.1109 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.2e-18 | 53 | 103 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + +kGVr++ grWv+e+r+p g ++r++lg+f tae+Aa+a++ a+++l+g OPUNC02G25480.1 53 PVFKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 103 579****887.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-13 | 53 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 54 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-28 | 54 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.667 | 54 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 54 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-8 | 55 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.87E-20 | 55 | 113 | No hit | No description |
PRINTS | PR00367 | 8.6E-8 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDVSAALSSD YSSGTPSPVA ADADDGSSAY MTVSSAPPKR RAGRTKFKET RHPVFKGVRR 60 RNPGRWVCEV REPHGKQRIW LGTFETAEMA ARAHDVAALA LRGRAACLNF ADSPRRLRVP 120 PIGASHDDIR RAAAEAAEAF RPPPDESNAT TEVAAAASGA TNSNAAQFAS HPYYEVVDDG 180 LDFGMQGYLD MAQGMLIDPP PMAGDPAVGG GEDDNDGEVQ LWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 52 | 110 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00644 | PBM | Transfer from LOC_Os02g45450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624757.1 | 1e-140 | dehydration-responsive element-binding protein 1G | ||||
Swissprot | Q6EP77 | 1e-141 | DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G | ||||
TrEMBL | A0A0E0K3K4 | 1e-162 | A0A0E0K3K4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G25480.1 | 1e-163 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 1e-34 | dehydration response element B1A |
Publications ? help Back to Top | |||
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