PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g45450.1
Common NameDREB1G, ERF25, LOC4330306, Os02g0677300, OsJ_007653, OSJNBb0005A04.16, P0135D07.43
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 225aa    MW: 23946.5 Da    PI: 4.9599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g45450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-1853103155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + +kGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  LOC_Os02g45450.1  53 PVFKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 103
                       579****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1353103IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2154112IPR016177DNA-binding domain
SMARTSM003804.5E-2854117IPR001471AP2/ERF domain
PROSITE profilePS5103221.66754111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3054113IPR001471AP2/ERF domain
PRINTSPR003678.6E-85566IPR001471AP2/ERF domain
CDDcd000188.72E-2155113No hitNo description
PRINTSPR003678.6E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDVSAALSSD YSSGTPSPVA ADADDGSSAY MTVSSAPPKR RAGRTKFKET RHPVFKGVRR  60
RNPGRWVCEV REPHGKQRIW LGTFETAEMA ARAHDVAALA LRGRAACLNF ADSPRRLRVP  120
PIGASHDDIR RAAAEAAEAF RPPPDESNAA TEVAAAASGA TNSNAEQFAS HPYYEVMDDG  180
LDLGMQGYLD MAQGMLIDPP PMAGDPAVGS GEDDNDGEVQ LWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14521101271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.510780.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329912500.0
Expression AtlasQ6EP77-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Os02g0677300 is a cold-inducible gene for the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance
    [PMID: 25367381]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g45450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g45450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605500.0AK060550.1 Oryza sativa Japonica Group cDNA clone:001-021-H10, full insert sequence.
GenBankAK1060410.0AK106041.1 Oryza sativa Japonica Group cDNA clone:001-206-E01, full insert sequence.
GenBankAP0057750.0AP005775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04.
GenBankAP0060600.0AP006060.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0135D07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624757.11e-163dehydration-responsive element-binding protein 1G
SwissprotQ6EP771e-164DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLA0A0D9YWE31e-161A0A0D9YWE3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NJ651e-161A0A0E0NJ65_ORYRU; Uncharacterized protein
STRINGOS02T0677300-021e-163(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.17e-37C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]
  3. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  4. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  5. Xiao N, et al.
    Fine mapping of the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance of wild rice seedlings.
    Theor. Appl. Genet., 2015. 128(1): p. 173-85
    [PMID:25367381]