PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G12100.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 322aa    MW: 33830.7 Da    PI: 5.8588
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G12100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.61.2e-23117178159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg +WrKYGqKe+++s++p++Y+rCt++    C+++++v+r+++dp    +tY geH+++
  ONIVA05G12100.1 117 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqMCTAQRQVQRCDDDPASYRVTYIGEHTCR 178
                      58***************************99989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-25104180IPR003657WRKY domain
PROSITE profilePS5081120.725112180IPR003657WRKY domain
SuperFamilySSF1182901.96E-23115180IPR003657WRKY domain
SMARTSM007746.4E-35117179IPR003657WRKY domain
PfamPF031064.5E-22118178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTSSMSPAPA PAYAQVMEDM EKGKELAAQL QGLLRDSPEA GRFVDQILHT FSRAMRALDK  60
AAVSAAGGEG SEVQSEVTCG GGASAGGKRK APAANRKANC RRRTQQSSGN TVVVKNLDDG  120
QAWRKYGQKE IQNSKHPKAY FRCTHKYDQM CTAQRQVQRC DDDPASYRVT YIGEHTCRDP  180
ATAPIIAAHV IHQVAAGDDD DGCGGLHAGS RLISFVAAPA APVDAAAAPT TSTITTVTAP  240
GPLLQPLKVE GSVGSSDQEE VLSSLTPGSS AARGGGVAGP FGPDQGDVTS SLHWSYDAVA  300
GMEFFKNDEV VFDLDDIMGL SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-46110178169OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981810.0DQ298181.1 Oryza sativa WRKY transcription factor 45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637594.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0HCL40.0A0A0E0HCL4_ORYNI; Uncharacterized protein
STRINGONIVA05G12100.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-24WRKY DNA-binding protein 46