PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G38760.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 316aa    MW: 33488.9 Da    PI: 5.8155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G38760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08166210554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  ONIVA03G38760.1 166 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 210
                      99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.43E-10159215No hitNo description
SuperFamilySSF474597.07E-15159220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14163221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6166210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAGQQPQQQG PPEDDFFDQF FSLTSSFPGA APGGRAAGDQ PFSLALSLDA AAAAEASGSG  60
KRLGVGDDAE GGGSKADRET VQLTGLFPPV FGGGGVQPPN LRPTPPTQVL CCSSGLCLSS  120
KSAELALIFV VFHPQQSKQG GAAVGPQPPA PRPKVRARRG QATDPHSIAE RLRRERIAER  180
MRALQELVPN TNKTDRAAML DEILDYVKFL RLQVKVLSMS RLGGAGAVAQ LVADIPLSVK  240
GEASDSGGNQ QIWEKWSTDG TERQVAKLME EDIGAAMQFL QSKALCMMPI SLAMAIYDTQ  300
QTQDGQPVKH EPNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683880.0AK068388.1 Oryza sativa Japonica Group cDNA clone:J013145C08, full insert sequence.
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633087.11e-179transcription factor UNE12 isoform X1
SwissprotO227683e-74UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0E0GUY50.0A0A0E0GUY5_ORYNI; Uncharacterized protein
STRINGONIVA03G38760.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.39e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]