PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G02590.3 | ||||||||
Common Name | BHLH59, EN93, T10P11.13, UNE12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 26834.6 Da PI: 9.2324 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.4e-09 | 94 | 138 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L AT4G02590.3 94 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 138 99***********************55......9**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.42E-15 | 87 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.802 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-14 | 91 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-6 | 94 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-10 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGGLGGSGPT GFHNQMFPLG LSLDQGKGPG FLRPEGGHGS GKRFSDDVVD NRCSSMKPVF 60 HGQPMQQPPP SAPHQPTSIR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPTVN 120 KTDRAAMIDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TDMPLSSSVE DETGEGGRTP 180 QPAWEKWSND GTERQVAKLM EENVGAAMQL LQSKALCMMP ISLAMAIYHS QPPDTSSVVK 240 PENNPPQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 103 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.20028 | 0.0 | bud| flower| leaf| root| seed| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30679204 | 0.0 | ||||
Genevisible | 255497_at | 0.0 | ||||
Expression Atlas | AT4G02590 | - | ||||
AtGenExpress | AT4G02590 | - | ||||
ATTED-II | AT4G02590 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G02590.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G03040, AT1G31050, AT1G62990, AT1G77950 | |||||
IntAct | Search O22768 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G02590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF367328 | 0.0 | AF367328.1 Arabidopsis thaliana AT4g02590/T10P11_13 mRNA, complete cds. | |||
GenBank | AK316748 | 0.0 | AK316748.1 Arabidopsis thaliana AT4G02590 mRNA, complete cds, clone: RAFL07-83-K16. | |||
GenBank | AY143951 | 0.0 | AY143951.1 Arabidopsis thaliana At4g02590/T10P11_13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001031577.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_001118919.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_567245.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | O22768 | 0.0 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A384KS03 | 1e-180 | A0A384KS03_ARATH; UNE12 | ||||
TrEMBL | B9DFF4 | 1e-180 | B9DFF4_ARATH; AT4G02590 protein | ||||
STRING | AT4G02590.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G02590.3 |
Entrez Gene | 828126 |
iHOP | AT4G02590 |
wikigenes | AT4G02590 |