PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G48370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 321aa MW: 33698 Da PI: 6.6943 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.8 | 7.8e-38 | 82 | 167 | 3 | 88 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 +k+++++++hTkv+gR+RR+R++a+caa +F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+ +++ s + ns + ONIVA01G48370.1 82 PKRSSNKDRHTKVDGRGRRIRMPALCAAWIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAPSLPSPNSALS 167 6999***********************************************************99999766222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-32 | 86 | 307 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.505 | 87 | 141 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MDPKFPPPPP LNKTEPTTTT TNQQHHHDEQ QQQHRLQIQV HPQQQEQQDG GGGGGKDQQQ 60 QQQMQVVVAA AAGERRMQGL GPKRSSNKDR HTKVDGRGRR IRMPALCAAW IFQLTRELGH 120 KSDGETVQWL LQQAEPAIVA ATGTGTIPAS ALASVAPSLP SPNSALSRSH HHHHHMWAAA 180 PPTASAGFAG AGFSGADSGV IGGIMQRMGI PAGIELQGGG AGGLGGGGGG GGGHIGFAPM 240 FAGHAAAAAA MPGLELGLSQ DGHIGVLAAQ SLSQFYHQVG AAGQLQHQHQ HQHHHQQQQQ 300 QQQEDGEDDR DDGESDEESG Q |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621786.1 | 1e-141 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 1e-49 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0E0FY63 | 0.0 | A0A0E0FY63_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G48370.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-38 | TCP family protein |