PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G07770.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 367aa    MW: 38922.1 Da    PI: 4.4268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G07770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19143193155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  OMERI01G07770.1 143 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDTAAIQLRG 193
                      689*******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-11143193IPR001471AP2/ERF domain
CDDcd000181.31E-28143203No hitNo description
Gene3DG3DSA:3.30.730.109.5E-29144202IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-21144202IPR016177DNA-binding domain
PROSITE profilePS5103223.393144201IPR001471AP2/ERF domain
SMARTSM003801.6E-33144207IPR001471AP2/ERF domain
PRINTSPR003674.8E-10145156IPR001471AP2/ERF domain
PRINTSPR003674.8E-10167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEEGFVAVK RTEHVEVTSL AVAVEATPSA KGGKGKVVVD GGGGAGGVGP TRVRVFCDDF  60
DATDSSSDED EEEEVTARRR VKRYVQEIRL QRAAAVAVPP VKVKGEEVFP AAVSAKMAEA  120
AKARVVLAAG RKRKAGGVDG AEPRFRGVRR RPWGKYAAEI RDPWRRVRVW LGTFDTAEEA  180
AKVYDTAAIQ LRGRDATTNF NQSGDSASLD VPQPPGASKN ASPATSYDSG EESHAAAASP  240
TSVLRSFPPS AVVATVDTAN KKQPAPPPLV VRETDESGDV FGCSFSDDGG FAGELPPVYT  300
DFDLLADFPE PPLDFLANLP VEPFSLAPFS SNNGSPDLDD DDAPSPAAAQ VDDFFQDITD  360
LFQIPVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19137200771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010540.0AK101054.1 Oryza sativa Japonica Group cDNA clone:J033015K21, full insert sequence.
GenBankAK1065170.0AK106517.1 Oryza sativa Japonica Group cDNA clone:002-107-B02, full insert sequence.
GenBankAP0018000.0AP001800.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0443E05.
GenBankAP0028350.0AP002835.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0417G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629650.10.0ethylene-responsive transcription factor CRF2
TrEMBLA0A0E0BZ810.0A0A0E0BZ81_9ORYZ; Uncharacterized protein
STRINGOMERI01G07800.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.14e-27cytokinin response factor 1