PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G11140.1 | ||||||||
Common Name | CRF1, ERF063, F2P3.5, T22B4.120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 31545.3 Da PI: 4.6423 | ||||||||
Description | cytokinin response factor 1 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.9e-20 | 86 | 135 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdps r r++lg+f+taeeAa +++a+ +l+g AT4G11140.1 86 KFRGVRQRP-WGKWAAEIRDPS----RrVRVWLGTFDTAEEAAIVYDNAAIQLRG 135 89*******.**********84....34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 85 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.815 | 86 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 86 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 86 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-40 | 86 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.34E-33 | 86 | 143 | No hit | No description |
PRINTS | PR00367 | 1.1E-10 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
METEKKVSLP RILRISVTDP YATDSSSDEE EEVDFDALST KRRRVKKYVK EVVLDSVVSD 60 KEKPMKKKRK KRVVTVPVVV TTATRKFRGV RQRPWGKWAA EIRDPSRRVR VWLGTFDTAE 120 EAAIVYDNAA IQLRGPNAEL NFPPPPVTEN VEEASTEVKG VSDFIIGGGE CLRSPVSVLE 180 SPFSGESTAV KEEFVGVSTA EIVVKKEPSF NGSDFSAPLF SDDDVFGFST SMSESFGGDL 240 FGDNLFADMS FGSGFGFGSG SGFSSWHVED HFQDIGDLFG SDPVLTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 85 | 143 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 44 | KRRRV |
2 | 64 | 71 | MKKKRKKR |
3 | 65 | 71 | KKKRKKR |
4 | 66 | 70 | KKRKK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145340095 | 0.0 | ||||
Genevisible | 254934_at | 0.0 | ||||
Expression Atlas | AT4G11140 | - | ||||
AtGenExpress | AT4G11140 | - | ||||
ATTED-II | AT4G11140 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G11140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top | ||||||
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Source | Upstream Regulator (A: Activate/R: Repress) | |||||
ATRM | AT2G20180 (R) |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G11140, AT4G23750, AT4G27950, AT5G11260, AT5G53290, AT1G22985, AT1G71130 | |||||
IntAct | Search O82503 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G11140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049876 | 0.0 | AL049876.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project). | |||
GenBank | AL161531 | 0.0 | AL161531.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31. | |||
GenBank | AY560849 | 0.0 | AY560849.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g11140) mRNA, complete cds. | |||
GenBank | BT025176 | 0.0 | BT025176.1 Arabidopsis thaliana At4g11140 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | F2P3 | 0.0 | AF080120.1 Arabidopsis thaliana BAC F2P3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_192852.1 | 0.0 | cytokinin response factor 1 | ||||
Swissprot | O82503 | 0.0 | CRF1_ARATH; Ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | A0A178V528 | 1e-163 | A0A178V528_ARATH; CRF1 | ||||
STRING | AT4G11140.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT4G11140.1 |
Entrez Gene | 826715 |
iHOP | AT4G11140 |
wikigenes | AT4G11140 |