PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539600.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 462aa    MW: 51690.5 Da    PI: 4.861
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539600.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3149.15.9e-46381391101
                        XXXXXXXXXXXXXXXXXXXXXXX...XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3   1 eelkkrmwkdqmllkrlkerkkqll.edkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 
                        e+l +rmwkd+++l+r+ker+ +l  + ++a+++++k + +++qa rkkmsraQDgiLkYMlk mevcna+GfvYgiip+kgkpv+gasd++
  KN539600.1_FGP006  38 EDLARRMWKDRIKLRRIKERQDRLAlALQQAELDKSKGKPISDQAMRKKMSRAQDGILKYMLKLMEVCNARGFVYGIIPDKGKPVSGASDNI 129
                        89*******************99651556666************************************************************ PP

                        XXXXXXXXXX CS
               EIN3  92 raWWkekvef 101
                        raWWkek e+
  KN539600.1_FGP006 130 RAWWKEKREE 139
                        ******9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048738.1E-4338136No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDHLAIIATE LGDSSDFEVE GIQNLTENDV SDEEIEAEDL ARRMWKDRIK LRRIKERQDR  60
LALALQQAEL DKSKGKPISD QAMRKKMSRA QDGILKYMLK LMEVCNARGF VYGIIPDKGK  120
PVSGASDNIR AWWKEKREER LVLSIDNGMS EVTHHGALEY RNGDTHSSSN EYDVDGFEEA  180
PLSTSSRDDE QDLSPAAQLS EEHAPTRRER AKVKRPNQVV PKKAGTKEPP KRKRPRHSVT  240
VIEHEVQRAD DASEHSRNMI PDMNRLDQVE IQGMANQITS FNEEANTSEA LQHRGNTQEL  300
AHLPADFNHY GNAQATIATP VSICMRGQAV PYESSDNSRP KTGNIFPQDS DSGFNNMPSS  360
YQTIPPKQPL PLSIMEHHVV PLGIRTPADN SPYSDQIIGS GNSTSVPGDM QLIDYPFYGE  420
QDKFAGSSFA GLPLDYISIS SPIPDIDDLL LHDDDLMEYL GT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00649PBMTransfer from LOC_Os09g31400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539600.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087580.0AC108758.2 Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence.
GenBankAK0659790.0AK065979.1 Oryza sativa Japonica Group cDNA clone:J013047J08, full insert sequence.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU6058270.0EU605827.1 Oryza sativa Japonica Group isolate Az14 mRNA sequence.
GenBankEU6058550.0EU605855.1 Oryza sativa Indica Group isolate Ba14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612094.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_015612095.10.0ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A0E0QT330.0A0A0E0QT33_ORYRU; Uncharacterized protein
STRINGORUFI09G15900.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37203779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.13e-48ETHYLENE-INSENSITIVE3-like 3