PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G37400.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 323aa MW: 34486.9 Da PI: 6.1503 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.8 | 1.9e-08 | 173 | 217 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L OBART03G37400.2 173 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 217 99***********************7.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.33E-15 | 166 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.58E-10 | 166 | 222 | No hit | No description |
PROSITE profile | PS50888 | 15.77 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-14 | 170 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-6 | 173 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAGQQPQQQG PPEDDFFDQF FSLTSSFPGA APGGRAAGDQ PFSLALSLDA AAAAEASGSG 60 KRLGVGDDAE GGGSKADRET VQLTGLFPPV FGGGAEPPPH PAYPGALLQQ RIVSQFEIGR 120 AGANFCCISA ALWRIFQVFH PQQSKQGGAA VGPQPPAPRP KVRARRGQAT DPHSIAERLR 180 RERIAERMRA LQELVPNTNK TDRAAMLDEI LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA 240 DIPLSVKGEA SDSGGNQQIW EKWSTDGTER QVAKLMEEDI GAAMQFLQSK ALCMMPISLA 300 MAIYDTQQTQ DGQPVKHEPN TPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 182 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068388 | 0.0 | AK068388.1 Oryza sativa Japonica Group cDNA clone:J013145C08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633087.1 | 1e-167 | transcription factor UNE12 isoform X1 | ||||
Swissprot | O22768 | 4e-74 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A0D3FQ69 | 0.0 | A0A0D3FQ69_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G37400.2 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-53 | bHLH family protein |
Publications ? help Back to Top | |||
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