PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G37400.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 269aa    MW: 28625.2 Da    PI: 5.1763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G37400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08119163554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  OBART03G37400.1 119 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 163
                      99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-15112173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-10112168No hitNo description
PROSITE profilePS5088815.77114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14116174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6119163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAGQQPQQQG PPEDDFFDQF FSLTSSFPGA APGGRAAGDQ PFSLALSLDA AAAAEASGSG  60
KRLGVGDDAE GGGSKADRET VQLTGLFPPS KQGGAAVGPQ PPAPRPKVRA RRGQATDPHS  120
IAERLRRERI AERMRALQEL VPNTNKTDRA AMLDEILDYV KFLRLQVKVL SMSRLGGAGA  180
VAQLVADIPL SVKGEASDSG GNQQIWEKWS TDGTERQVAK LMEEDIGAAM QFLQSKALCM  240
MPISLAMAIY DTQQTQDGQP VKHEPNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683880.0AK068388.1 Oryza sativa Japonica Group cDNA clone:J013145C08, full insert sequence.
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633087.11e-158transcription factor UNE12 isoform X1
SwissprotO227683e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D3FQ680.0A0A0D3FQ68_9ORYZ; Uncharacterized protein
STRINGOPUNC03G34510.21e-160(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]