PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G33870.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 235aa    MW: 24270.5 Da    PI: 9.9084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G33870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-213283156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  OBART01G33870.1 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83
                     68********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-143282IPR001471AP2/ERF domain
CDDcd000182.23E-183290No hitNo description
SMARTSM003802.2E-373396IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-233391IPR016177DNA-binding domain
PROSITE profilePS5103224.3683390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-323390IPR001471AP2/ERF domain
PRINTSPR003673.2E-113445IPR001471AP2/ERF domain
PRINTSPR003673.2E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAPRAATVEK VAVAPPTGLG LGVGGGVGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQSMVDCG GSPSSNSTVD TGGGGVQTPM  120
RAMPLPPTLD LDLFHRAAAV TAVAGTGVRF PFRGYPVARP ATHPYFFYEQ AAAAAAAAAG  180
YRMMKLAPPV TVAAVAQSDS DSSSVVDLAP SPPAVTANKA AAFDLDLNRP PPVEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-222995168ATERF1
3gcc_A2e-222995168ATERF1
5wx9_A9e-222490572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0368830.0AB036883.1 Oryza sativa mRNA for osERF3, complete cds.
GenBankAB0371830.0AB037183.1 Oryza sativa osERF3 mRNA for ethylene responsive element binding factor3, complete cds.
GenBankAK0613800.0AK061380.1 Oryza sativa Japonica Group cDNA clone:006-304-H01, full insert sequence.
GenBankAP0032990.0AP003299.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0699H05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankKM2628350.0KM262835.1 Oryza sativa Indica Group cultivar Nagina 22 Aptella 2-like transcription factor (AP37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622082.11e-165ethylene-responsive transcription factor 8
TrEMBLA0A0D3EV161e-165A0A0D3EV16_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YG391e-165A0A0D9YG39_9ORYZ; Uncharacterized protein
TrEMBLI1NSE11e-165I1NSE1_ORYGL; Uncharacterized protein
STRINGOGLUM01G38110.11e-166(Oryza glumipatula)
STRINGORGLA01G0278100.11e-166(Oryza glaberrima)
STRINGOBART01G33870.11e-166(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-22erf domain protein 9