PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G25240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 31587.8 Da PI: 4.2452 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.1e-20 | 101 | 151 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAa+ +++a+ +l+g OBART01G25240.1 101 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDNAAIQLRG 151 69********.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 101 | 151 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.93E-30 | 101 | 161 | No hit | No description |
SMART | SM00380 | 7.8E-37 | 102 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 102 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 102 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 102 | 161 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-10 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MSRSRTVRIF WDDPDLTDSS GEDEGCGGRR VGSMVRELPP AQLPVPQAGF APAAAAAAAA 60 LPEQCSGGDG DMGRRVVGGG FTVGVGRRRL TKGGGPGAPS TKFRGVRRRP WGKFAAEIRD 120 PWRGVRVWLG TFDTAEEAAR VYDNAAIQLR GPSATTNFSA STNSAGAQDP VAVGYESGAE 180 SSPAVSSPTS VLRKVPSLCS LAEDKDDYEV GPCEPATAAG SNLTVLEEEE LGEFVPFEDA 240 PVYGGSNFWD FEPESGFLYA EPSSPETPWD AGATSSGEAQ DYFQDLRDLF PLNPLPAIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-22 | 93 | 163 | 5 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003294 | 0.0 | AP003294.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0694A04. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635207.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A0D3ES21 | 0.0 | A0A0D3ES21_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NQB5 | 0.0 | I1NQB5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0205500.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART01G25240.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 1e-24 | cytokinin response factor 1 |