PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009624724.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 415aa MW: 44301.7 Da PI: 9.1211

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009624724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.8	2.6e-40	112	226	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s++ XP_009624724.1 112 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplfih 206 899***************************************************************99977777777777444334444445544 PP TCP 89 ...................k 89 + XP_009624724.1 207 ggsttmlgfhhqlsnagfgQ 226 44444444433333333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-38	115	255	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.705	115	169	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MEFMEPHRKK QSGGSSTSGT DHHHHHQHAQ HQQHNQETPS SLQLVSPHQS QPDPPTPGSN 60 QPHPHPHGPF MGSISMQSRT LFSPPSTNNS SSSTTPTTTP TPNNTLSTKV VKKPSKDRHT 120 KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS 180 TLNVSLRSSG TTISAPPSKS APLFIHGGST TMLGFHHQLS NAGFGQAPDE NNYMKKRFRE 240 DTSGANSPSG DKPERTGVQA HEPGSDSKPG SSQTSSFIPA PAMWAVAPAA GNVGSAFWML 300 PVSGGTGSTT ASVGGAQPDH QLWRSRIGGF EFPGSGRFSP VQLGSMVLQQ SQPVQQLGLG 360 VTETNMGMLS SMNNAYNSSG NNRVDLGMNL EQHHHHQNQT QGSDSGDENH KDSQS

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MEFMEPHRKK QSGGSSTSGT DHHHHHQHAQ HQQHNQETPS SLQLVSPHQS QPDPPTPGSN  60
QPHPHPHGPF MGSISMQSRT LFSPPSTNNS SSSTTPTTTP TPNNTLSTKV VKKPSKDRHT  120
KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS  180
TLNVSLRSSG TTISAPPSKS APLFIHGGST TMLGFHHQLS NAGFGQAPDE NNYMKKRFRE  240
DTSGANSPSG DKPERTGVQA HEPGSDSKPG SSQTSSFIPA PAMWAVAPAA GNVGSAFWML  300
PVSGGTGSTT ASVGGAQPDH QLWRSRIGGF EFPGSGRFSP VQLGSMVLQQ SQPVQQLGLG  360
VTETNMGMLS SMNNAYNSSG NNRVDLGMNL EQHHHHQNQT QGSDSGDENH KDSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624724.1	0.0	PREDICTED: transcription factor TCP23-like
Refseq	XP_018633044.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9C518	5e-70	TCP8_ARATH; Transcription factor TCP8
Swissprot	Q9LQF0	2e-70	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A1S4D6B7	0.0	A0A1S4D6B7_TOBAC; transcription factor TCP23-like
STRING	XP_009624724.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-64	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]