PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616026.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 275aa    MW: 30310.7 Da    PI: 9.8581
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     + +WT eE+  l+ +v+++G+g+Wk I r        ++R+  ++k++w++
   XP_009616026.1  5 KVKWTSEEEGALKAGVAKHGTGRWKNILRDPEfarflTNRSNIDLKDKWRN 55
                     579***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.113162IPR017930Myb domain
SuperFamilySSF466893.81E-15357IPR009057Homeodomain-like
SMARTSM007171.3E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13556IPR009057Homeodomain-like
PfamPF002495.1E-8555IPR001005SANT/Myb domain
CDDcd116607.03E-20656No hitNo description
SMARTSM005264.2E-14112177IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.8E-14112183IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.59114182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.01E-14115182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.5E-10116175IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGNQKVKWTS EEEGALKAGV AKHGTGRWKN ILRDPEFARF LTNRSNIDLK DKWRNMGFST  60
AAQGSKDKSG FSRARPKTIS ALAPSTVQTP LAITSAPEND AMDGSPESPQ GSKNAPKYND  120
MIFEALSSMK CSNGCDLGAI VGFIEQRHEV PQNFRRLLSS KLRRLVLKGK LERVQNCYKI  180
KDATLETKIT IPKQKDVLPR PAPNSAVKVS CETMKEAAGI AAYKIADAEE KSFLAAEALN  240
NAERVSKMAE DAESMLQLFK EIYEQCSRGQ IVLLA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616026.10.0PREDICTED: telomere repeat-binding factor 4
RefseqXP_016510058.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A1S4D9K50.0A0A1S4D9K5_TOBAC; telomere repeat-binding factor 4-like
STRINGXP_009616026.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.17e-56MYB_related family protein