PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009607840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 401aa MW: 44506.8 Da PI: 5.6025 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.8 | 2.6e-29 | 172 | 233 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt + gC ++k+v+rs+edp+++eitY+g+H+++ XP_009607840.1 172 LDDGFSWRKYGQKDILGAKYPRGYYRCTLRhaqGCLATKQVQRSDEDPTILEITYRGRHTCN 233 59**************************988889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.837 | 167 | 230 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.4E-28 | 169 | 233 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-25 | 171 | 234 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-41 | 172 | 234 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-26 | 173 | 232 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MVSPIKFNYH IPTLSLLQLF VLYSTYTLIS EMENYGADNN GEFNRIISEL TQGRDLVYQL 60 QLQLNSSSSS PETARDFLLH NIQSKFDKAL SLLQLSTGDS SNSLLPHSNS VPIPNFGRSE 120 SPPSFTASPP HSEDSDRDLE PKDSATRKRK SSTPRWTKQV QICPGAPIEG TLDDGFSWRK 180 YGQKDILGAK YPRGYYRCTL RHAQGCLATK QVQRSDEDPT ILEITYRGRH TCNQGGASAN 240 NNNNNNNNVM NSAPLTIIPQ NQEPNLGVGS GNEHHQMVSV PNQNPQEILL NFQRNLNISN 300 DNNFNFNYDP NNVPFTSFAS SSDIKADQDY SFVPNSIIPS NNFVENFSPS YMSAGTSGSS 360 SSYFGLSSNS EMNTFGGKQN GSNDYPFNTS NFPFDYPGFS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-19 | 172 | 232 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 150 | TRKRKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00525 | DAP | Transfer from AT5G24110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ460084 | 4e-95 | DQ460084.1 Nicotiana tabacum cDNA-AFLP fragment HN_BC2M14-487 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607840.1 | 0.0 | PREDICTED: probable WRKY transcription factor 30 isoform X1 | ||||
TrEMBL | A0A1S4DHQ6 | 0.0 | A0A1S4DHQ6_TOBAC; probable WRKY transcription factor 30 | ||||
STRING | XP_009607840.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11743 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 3e-45 | WRKY family protein |