PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G11070.1
Common NameAtWRKY41, F2P3.16, T22B4.50, WRKY41
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 313aa    MW: 34894.2 Da    PI: 9.576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G11070.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.91e-28141201259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dD ++WrKYGqK++ g++fprsYYrCt++    C+++k+v+rs+ dp+++e+tY+g+H+++
  AT4G11070.1 141 DDIFSWRKYGQKDILGAKFPRSYYRCTFRntqYCWATKQVQRSDGDPTIFEVTYRGTHTCS 201
                  8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.599135198IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-27136201IPR003657WRKY domain
SuperFamilySSF1182902.22E-24139201IPR003657WRKY domain
SMARTSM007743.5E-38140202IPR003657WRKY domain
PfamPF031061.1E-25141200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEMMNWERRS LLNELIHGLK AAKQLQGSSS PSLSASSSYL TTEIKENLLH NIVSSFKKAI  60
LMLNGSTTQH NPTIELAPDP LAHPGKVPGS PASITGNPRS EEFFNVRSKE FNLSSKKRKM  120
LPKWTEQVRI SPERGLEGPH DDIFSWRKYG QKDILGAKFP RSYYRCTFRN TQYCWATKQV  180
QRSDGDPTIF EVTYRGTHTC SQGIPLPEKR ETKPKHTVAV NYQNLRASLT VRTGGLGSEA  240
FSFPVTSPLY TYESINGGGT FYHHVGSSGP SDFTGLISTN TSTGSSPIFD VNFQFDPTAE  300
INTGFPTFFH NSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-181421981874Disease resistance protein RRS1
5w3x_D3e-181421981874Disease resistance protein RRS1
6ir8_A3e-18141200968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.273460.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306816460.0
Expression AtlasAT4G11070-
AtGenExpressAT4G11070-
Functional Description ? help Back to Top
Source Description
TAIRmember of WRKY Transcription Factor; Group III
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. WRKY41 is an important regulator of ABI3 expression, and hence of seed dormancy.
    [PMID: 24946881]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G11070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G11070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423960.0AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankAY1336860.0AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192845.10.0WRKY family transcription factor
SwissprotQ8H0Y80.0WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A178V3X90.0A0A178V3X9_ARATH; WRKY41
STRINGAT4G11070.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Representative plantOGRP1417875
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Higashi K, et al.
    Modulation of defense signal transduction by flagellin-induced WRKY41 transcription factor in Arabidopsis thaliana.
    Mol. Genet. Genomics, 2008. 279(3): p. 303-12
    [PMID:18219494]
  5. Ding ZJ, et al.
    WRKY41 controls Arabidopsis seed dormancy via direct regulation of ABI3 transcript levels not downstream of ABA.
    Plant J., 2014. 79(5): p. 810-23
    [PMID:24946881]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]