PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591629.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 503aa    MW: 54654.2 Da    PI: 6.5887
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31148205260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  XP_009591629.1 148 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 205
                     8****************************************.***************85 PP
2WRKY106.51.4e-33319377159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_009591629.1 319 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 377
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26138206IPR003657WRKY domain
PROSITE profilePS5081122.435142206IPR003657WRKY domain
SuperFamilySSF1182901.83E-24144206IPR003657WRKY domain
SMARTSM007743.4E-33147205IPR003657WRKY domain
PfamPF031067.3E-24148204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37304379IPR003657WRKY domain
SuperFamilySSF1182901.96E-29311379IPR003657WRKY domain
PROSITE profilePS5081138.825314379IPR003657WRKY domain
SMARTSM007743.1E-39319378IPR003657WRKY domain
PfamPF031062.9E-26320377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MQGSSGSAAL SFMRSCSSGN AYGETTGEFE FKFAIGSSST SGSLAKEAAT FAGLNQQQSE  60
PLNQIQDRYL FQSFAPSALV RSEMPNSKEV SLPAPVSLDA SSISTAAADA AAIDNEEISQ  120
RGHSNPSSQG SHADNRDVSS ITAERSSDDG YNWRKYGQKL VKGSEFPRSY YKCTYPNCEV  180
KKIFERSPEG QITEIVYKGS HDHPKPQPSR RFTPGALTSI QEDRSEKEAS FTGQEDKFNT  240
NAYTSNIEPS STPVSPRLAE DDGLEGTVSQ LQSANDQLDE DDPFAKRRKM DGGMDITPVV  300
KPIREPRVVV QTVSEVDILD DGYRWRKYGQ KVVRGNPNPR SYYKCTNAGC PVRKHVERAS  360
HDPKAVITTY EGKHNHDVPT ARNHSHEMAG SAPVTGSSRV RAEENGSISL DLGVGIGYGM  420
ENRSNGQLHT RPAENVRNQV QVSSSSMMVV QPGAVAACYG IVNGGMSRFG SIDNRIQGTG  480
FESLPLQPST QCPQNYGRII LGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37148379877Probable WRKY transcription factor 4
2lex_A2e-37148379877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111310.0AB711131.1 Nicotiana benthamiana NbWRKY10 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591627.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-126WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1S3YER90.0A0A1S3YER9_TOBAC; probable WRKY transcription factor 20
STRINGXP_009591627.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-125WRKY family protein