PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016498405.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 387aa MW: 39733.9 Da PI: 6.7408

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016498405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8e-12	195	240	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y++ Lq XP_016498405.1 195 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 240 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.06E-16	188	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.65E-13	188	244	No hit	No description
PROSITE profile	PS50888	17.193	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-16	192	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-9	195	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MQAMNSQMSL QEENGASSGQ NMSHSHFDPT SSHDDFLQQI LSSVPSSSPW PDLSGGGDGH 60 FDDQSIFLAS KLRQNQITGG GGGAAAKALM LQQQLLLSRG LLAGNGDQND DVGNPGNEIS 120 VQALYNGFAG SLGQTSNQPQ HFHHAQGGSM QAQSFGAPAS STMNQTPAAS GGSGGGGQPK 180 QQKVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNA NKTDKASMLD EIIDYVRFLQ 240 LQVKVLSMSR LGGAAAVAPL VADRSSEGGG GDCAQANRGR GSNGTTSLAN NDSMTMTEHQ 300 VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISTATCHSM KPNNPLLHGG GGGSGGSTAI 360 NGGGGGPSSP SLSASTVQSA TMGNGGA

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MQAMNSQMSL QEENGASSGQ NMSHSHFDPT SSHDDFLQQI LSSVPSSSPW PDLSGGGDGH  60
FDDQSIFLAS KLRQNQITGG GGGAAAKALM LQQQLLLSRG LLAGNGDQND DVGNPGNEIS  120
VQALYNGFAG SLGQTSNQPQ HFHHAQGGSM QAQSFGAPAS STMNQTPAAS GGSGGGGQPK  180
QQKVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNA NKTDKASMLD EIIDYVRFLQ  240
LQVKVLSMSR LGGAAAVAPL VADRSSEGGG GDCAQANRGR GSNGTTSLAN NDSMTMTEHQ  300
VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISTATCHSM KPNNPLLHGG GGGSGGSTAI  360
NGGGGGPSSP SLSASTVQSA TMGNGGA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	204	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016498405.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	1e-87	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1S4CB91	0.0	A0A1S4CB91_TOBAC; transcription factor bHLH66-like
STRING	XP_009619149.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-64	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]