PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436833.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 519aa    MW: 56217 Da    PI: 6.6752
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.3e-31164221260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  XP_016436833.1 164 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 221
                     8****************************************.***************85 PP
2WRKY106.41.4e-33335393159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_016436833.1 335 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 393
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-26154222IPR003657WRKY domain
PROSITE profilePS5081122.435158222IPR003657WRKY domain
SuperFamilySSF1182901.96E-24160222IPR003657WRKY domain
SMARTSM007743.4E-33163221IPR003657WRKY domain
PfamPF031067.7E-24164220IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37320395IPR003657WRKY domain
SuperFamilySSF1182901.96E-29327395IPR003657WRKY domain
PROSITE profilePS5081138.825330395IPR003657WRKY domain
SMARTSM007743.1E-39335394IPR003657WRKY domain
PfamPF031063.0E-26336393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAEPSPTTGS FSKFQLMQGS SGSAAFSFMR SCSSGNAYGE TTGEFEFKFA IGSSSTSGSL  60
AKEAATFAGL NQQQSEPLNQ IQDRCLSQSL APSALVKCEM PNSKEVSQPA PVSLDASSFS  120
TAAADPAAID NEEKSQRGHS NPSSQGSHAD NRDVSSITAE RSSDDGYNWR KYGQKLVKGS  180
EFPRSYYKCT YPNCEVKKIF ERSPEGQITE IVYKGSHDHP KPQPSRRFTP GALMSIQEDR  240
SEKEASFTGQ EDKFNANAYT SNIEPSSTPV SPRPADDDGL EGAVSQLQSA SDQLDEDDPF  300
AKRRKMDGGM DITPVVKPIR EPRVVVQTVS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK  360
CTNAGCPVRK HVERASHDPK AVITTYEGKH NHDVPTARNN SHEMAGSAPV TGSSRVRAEE  420
NGSISLDLGV GIGYGMENRS NGQLYTRPAE SVRNQVQVSS SSVMVVQPAA VAASYGIVNG  480
GMSRFGSIDN RIQGTGFESL PLQPSTQCHQ NYGRIILGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37164395877Probable WRKY transcription factor 4
2lex_A2e-37164395877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111310.0AB711131.1 Nicotiana benthamiana NbWRKY10 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436831.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
RefseqXP_016436833.10.0PREDICTED: probable WRKY transcription factor 20 isoform X3
TrEMBLA0A1S3XA940.0A0A1S3XA94_TOBAC; probable WRKY transcription factor 20 isoform X1
TrEMBLA0A1S3XAN90.0A0A1S3XAN9_TOBAC; probable WRKY transcription factor 20 isoform X3
STRINGXP_009790875.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-129WRKY family protein