PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009776828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 367aa MW: 40893.5 Da PI: 6.8976 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 261 | 295 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l XP_009776828.1 261 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 295 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 7.7E-75 | 14 | 350 | IPR016679 | Transcription factor, GATA, plant |
Gene3D | G3DSA:3.30.50.10 | 5.0E-15 | 254 | 292 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.743 | 255 | 291 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.3E-18 | 255 | 305 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.71E-15 | 256 | 319 | No hit | No description |
CDD | cd00202 | 3.72E-14 | 260 | 307 | No hit | No description |
Pfam | PF00320 | 1.4E-15 | 261 | 295 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 261 | 286 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
METPEFFQAS YYKSQFTPEK RLSDAKNGDH FVVEDLLDLP NDDGMVTDGT LDATVTGNSA 60 DSSVVDNSCN SSLSGSNHDP QLPVDNIIGC RNFPDGQFSS EFSVPYDDLA ELEWLSNFVE 120 ESFSSNEMQK IQFIQGMKCR NDNETHQFIP DPNNNRASAA TNPIFNPDMS VPAKARSKRS 180 RMAPGNWASR LLVVSPNSPN NTPNSPMNTT SMQDMSSSSE SGIISSSGKK TVKSSTPKIK 240 KENTQHVPNN NMASNSEGRK CLHCATDKTP QWRTGPMGPK TLCNACGVRY KSGRLVPEYR 300 PAASPTFVLT KHSNSHRKVL EIRRQKEIVR THQQQQQFLP QNMMFDVSSA DDYLIHQHIG 360 PDFRHLI |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00048 | PBM | Transfer from AT4G32890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776828.1 | 0.0 | PREDICTED: GATA transcription factor 12 | ||||
Refseq | XP_016514226.1 | 0.0 | PREDICTED: GATA transcription factor 9-like | ||||
TrEMBL | A0A1S4DLF5 | 0.0 | A0A1S4DLF5_TOBAC; GATA transcription factor | ||||
TrEMBL | A0A1U7WDU7 | 0.0 | A0A1U7WDU7_NICSY; GATA transcription factor | ||||
STRING | XP_009776828.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1919 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25830.1 | 4e-74 | GATA transcription factor 12 |