PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771991.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 541aa    MW: 61051.9 Da    PI: 4.4418
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-54101381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yL++k++g++++    i+++diykvePwdLp k ++k+++ ewyfFs  dkky +g r+nrat++gyWk+tgkd++v+
  XP_009771991.1  10 LAPGFRFHPTDEELVRYYLRRKITGRPIKS-APISDIDIYKVEPWDLPgKsRLKTRDLEWYFFSVLDKKYGNGARTNRATEKGYWKTTGKDRAVH 103
                     579************************999.78***************6347777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++k+++vg+kktLv+++grapkg++t+Wvmheyrl
  XP_009771991.1 104 RNKSQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 138
                     *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-629161IPR003441NAC domain
PROSITE profilePS5100558.91910161IPR003441NAC domain
PfamPF023652.1E-2812138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MESRGSLKSL APGFRFHPTD EELVRYYLRR KITGRPIKSA PISDIDIYKV EPWDLPGKSR  60
LKTRDLEWYF FSVLDKKYGN GARTNRATEK GYWKTTGKDR AVHRNKSQVV GMKKTLVYHS  120
GRAPKGQRTN WVMHEYRLID EELDRAGIPQ DAFVVCRVFQ KSGAGPKNGE QYGAPFIEEE  180
WEEDELQVLP KDEAAEEFVF DDDIYLDGIE LDQILGTETT LNSAPLPLDY CYGENGSSEE  240
TNNSSDAQNW LQQPDELKPI DLAVQQNVDV DPVMHEYIGE SSKNVNSEDV DYLLHEPTVN  300
ATDDLQFKEE AFLEANDLSN PIEVDSSGFD MLEEYLTFFD ANDDFQHMGF DPSVLFGNDD  360
QISDQALLAE KNIGEVTQQF IAPNEGLGEN KNDFASSSKL EPTKFGSDRQ YPFMKKASQM  420
LGNIHAPPAF ASEFPTKDAT LRLNSLSQSS SSVQVTAGFQ IRDTTVGSNG TGWPLGKYAD  480
YNIILSFGIS RRSDDSAMES FYSIHPGKTT SIISRGWFYY LFFSFLMLCM SFKIGTIICA  540
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-45916719174NAC domain-containing protein 19
3swm_B5e-45916719174NAC domain-containing protein 19
3swm_C5e-45916719174NAC domain-containing protein 19
3swm_D5e-45916719174NAC domain-containing protein 19
3swp_A5e-45916719174NAC domain-containing protein 19
3swp_B5e-45916719174NAC domain-containing protein 19
3swp_C5e-45916719174NAC domain-containing protein 19
3swp_D5e-45916719174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771991.10.0PREDICTED: NAC domain-containing protein 78-like isoform X1
RefseqXP_016454400.10.0PREDICTED: NAC domain-containing protein 78-like isoform X1
TrEMBLA0A1S3YQZ90.0A0A1S3YQZ9_TOBAC; NAC domain-containing protein 78-like isoform X1
TrEMBLA0A1U7W4640.0A0A1U7W464_NICSY; NAC domain-containing protein 78-like isoform X1
STRINGXP_009771991.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-127NAC domain containing protein 53