PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768030.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 341aa    MW: 38455.9 Da    PI: 4.3976
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1860113356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++  +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  XP_009768030.1  60 KKRRLRVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 113
                     45578899*********************************************9 PP
2HD-ZIP_I/II126.61.1e-4059149191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl  +qvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy+++k+++d+lk++ e+L++++e+L +e+
  XP_009768030.1  59 EKKRRLRVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNVIKANFDSLKHNYESLQHDNEALLKEI 149
                     69*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1949117IPR009057Homeodomain-like
PROSITE profilePS5007117.36255115IPR001356Homeobox domain
SMARTSM003894.1E-1758119IPR001356Homeobox domain
PfamPF000461.4E-1560113IPR001356Homeobox domain
CDDcd000862.47E-1660116No hitNo description
Gene3DG3DSA:1.10.10.604.5E-1963122IPR009057Homeodomain-like
PRINTSPR000319.0E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000319.0E-695111IPR000047Helix-turn-helix motif
PfamPF021836.5E-16115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKRVRSSDSL GVPLMSMCQN TTDDHNQWNS QVYSRNFQSM LELGLEDEPC AEESGHGSEK  60
KRRLRVDQVK ALEKNFEVDN KLEPERKVKL AQELGLQPRQ VAIWFQNRRA RWKTKQLERD  120
YNVIKANFDS LKHNYESLQH DNEALLKEIC DLKSKLNGGN NESKADVKEE AIESETDDKD  180
IDQSKPNNST TSLGNCEDDS TELNIESFNG GNGIITSSNI FADFKDGSSD SDSSAILNEE  240
NSPNYAAISS SGAFLISNNG GSNSSSSNSS LNCFQFFDSN PKAILGDGQD KVVYNNQPQF  300
VKMEEHNFFS SEESCSTLFA DEQPPTLQWY CSEDWNNWKD S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755174e-95HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768030.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
RefseqXP_016493903.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1S4BYI30.0A0A1S4BYI3_TOBAC; homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1U7W1A40.0A0A1U7W1A4_NICSY; homeobox-leucine zipper protein ATHB-6-like
STRINGXP_009768030.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.15e-67homeobox protein 6