PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025233-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 291aa MW: 32264.3 Da PI: 8.4181

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025233-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl NNU_025233-RA 14 KGAWTKEEDQRLINYIRTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	59.9	5.7e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ NNU_025233-RA 67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.759	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.47E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.11E-11	16	61	No hit	No description
PROSITE profile	PS51294	29.427	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.56E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009611	Biological Process	response to wounding
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0090378	Biological Process	seed trichome elongation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR THGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG 120 LDPQTHRPLN SATNSSTTTP STTNTTNAYS DALNSSSPAA VLPEIVAINK TADKKGTTII 180 GANSAEEAHS SSGTTEEELL KHQPQQQQQE QNYPELNLEL SISLPSQSTP TANTAESKPQ 240 QFSIFAAPAP MIAQTICVCC RLGFQSSQNC NCQTTMITNG VHILQTSRFI D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-30	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00053	PBM	Transfer from AT1G22640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246045.1	0.0	PREDICTED: myb-related protein 330
Swissprot	P81395	1e-102	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A1U7YZF7	0.0	A0A1U7YZF7_NELNU; myb-related protein 330
STRING	XP_010246045.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	8e-90	myb domain protein 6

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]